Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5098g00011 ATGGAAAAGCTAGTATTGAGTGTTGTGCTATTGTTGGTTGGGTTATCCACCTCTCAGCTAAGAACAGCAGCCGGTGCCGGCTGGCTGCAAGCACATGCAACTTTCTATGGAGGAAGCGACGCCTCTGGCACAATGGGAGGTGCATGTGGTTATGGGAATCTATACACGGATGGCTACGGGACAAAAACGGCAGCGTTAAGCACAGCTCTGTTCAACGACGGGAAGGCGTGCGGTGGGTGCTATCAGATAGTGTGTGACGCAACGCAAGCGCCACAGTGGTGCCTGAGAGGGACTCACATCACAATCACTGCCACAAATTTCTGTCCTCCAAACTTCGCTCTCCCCAACGACAATGGAGGTTGGTGCAATCCTCCCAGACCTCATTTTGATATGTCTCAGCCTGCTTTCGAGACCATCGCCAAGTACAGGGCCGGAATCGTTCCCGTTTTCTTCAGACGGAAGGTTGATGTGGTATTTATAGAAGATACTCCAGGAGGAAGAAAGAAAGGAAGAGAAAAAAGAAGCAGTTCAACTACAAATGATGGAGGCCTGGAATATGCTCCTTTCATGTTGCAAATTCAACCATCTCAAACTCAAGTGCAATTCGCTGATATTGCCTAA 621 0.4895 MEKLVLSVVLLLVGLSTSQLRTAAGAGWLQAHATFYGGSDASGTMGGACGYGNLYTDGYGTKTAALSTALFNDGKACGGCYQIVCDATQAPQWCLRGTHITITATNFCPPNFALPNDNGGWCNPPRPHFDMSQPAFETIAKYRAGIVPVFFRRKVDVVFIEDTPGGRKKGREKRSSSTTNDGGLEYAPFMLQIQPSQTQVQFADIA 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5098g00011 206 CDD DPBB_EXPA_N 27 153 - -
Pral5098g00011 206 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Pral5098g00011 206 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Pral5098g00011 206 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Pral5098g00011 206 PRINTS Expansin signature 136 149 IPR002963 GO:0009664
Pral5098g00011 206 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Pral5098g00011 206 Pfam Lytic transglycolase 63 150 IPR009009 -
Pral5098g00011 206 SMART dpbb_1 63 151 IPR007112 -
Pral5098g00011 206 Gene3D - 14 155 IPR036908 -
Pral5098g00011 206 PRINTS Expansin/Lol pI family signature 144 160 IPR007118 GO:0005576
Pral5098g00011 206 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Pral5098g00011 206 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Pral5098g00011 206 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Pral5098g00011 206 PANTHER EXPANSIN-A15 9 153 IPR002963 GO:0009664
Pral5098g00011 206 SUPERFAMILY Barwin-like endoglucanases 27 153 IPR036908 -
Pral5098g00011 206 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 153 IPR007112 -
Pral5098g00011 206 FunFam Expansin 18 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5098g00011 Pral-Chr5098 40002 41354 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5098g00011 1 153 Expansin Gene Family AT4G01630 72.549 4.46e-84 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5098g00011 - - gmx:100783801 272.707