Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5095g00104 ATGGCTCACAACAGTAACAATGCCGCCGGAGTCGACAACACGTTCAGAAGAAAATTTGATCGAGAGGAGTATTTGGAACGAGCTCGGGAGCGTGAGAGACAGGAAGAGGAGGCTCGATCTAGACCTAAAAGCAAAGGTCCCCCAGTGCAGCGGAAACCCTTGAAACATAGAGATTATGAAGTGGACCTTGAATCCCGCTTGGGGAAGACTCAGGTTGTTACTCCAGTTGCGCCTCTAAGCCAGCAGGCTGGATACTACTGCCCGGTTTGTGAGTGTGTGGTAAAGGATTCTGCAAATTACTTGGATCATATTAATGGAAAGAAACATCAAAGAGCTCTGGGAATGTCTATGCGAGTAGAGCGTGCTTCTCTTTCACAGGTTCAGGAACGATTTGAAGTTCTTAAAAAGCGCAAAGCACTTGGAAGCTTCACAGAGCAAGATCTGGATGACCGGATCTTAAAACAGCAACAAGAAGAAGAAGAAAGAAAGAGACAGCGACGGGAAAGGAAGAAAGAGAAGAAGAAAGAGAAGGAAGTTGAGGAAGCACCAGAAACAGATCCTGATGTTGCAGCTATGATGGGGTTCGGTGGCTTTCGGTCATCCAAGAAATGA 612 0.4657 MAHNSNNAAGVDNTFRRKFDREEYLERARERERQEEEARSRPKSKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCPVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLSQVQERFEVLKKRKALGSFTEQDLDDRILKQQQEEEERKRQRRERKKEKKKEKEVEEAPETDPDVAAMMGFGGFRSSKK 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5095g00104 203 SMART ZnF_U1_5 82 116 IPR003604 GO:0003676|GO:0008270
Pral5095g00104 203 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 9 203 IPR040107 GO:0000398|GO:0005681
Pral5095g00104 203 MobiDBLite consensus disorder prediction 151 184 - -
Pral5095g00104 203 Coils Coil 21 41 - -
Pral5095g00104 203 Coils Coil 153 182 - -
Pral5095g00104 203 Gene3D Classic Zinc Finger 79 117 - -
Pral5095g00104 203 MobiDBLite consensus disorder prediction 151 203 - -
Pral5095g00104 203 MobiDBLite consensus disorder prediction 14 44 - -
Pral5095g00104 203 SUPERFAMILY beta-beta-alpha zinc fingers 80 121 IPR036236 -
Pral5095g00104 203 MobiDBLite consensus disorder prediction 1 57 - -
Pral5095g00104 203 Pfam Zinc-finger double-stranded RNA-binding 85 110 IPR022755 -
Pral5095g00104 203 FunFam zinc finger matrin-type protein 2-like 79 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5095g00104 Pral-Chr5095 425694 428803 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5095g00104 4 147 C2H2 Transcription Factor Family AT3G05760 81.944 4.31e-85 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral5095g00104 zf-C2H2_jaz 3.5e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5095g00104 K12848 - gmx:100527057 290.041