Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5095g00101 ATGGGAAGCGGGAAGAAACACGATCTGGAGCTTGAGAAAGTTCGTTTAGTGAGCTTGGCTCTTGATTTTGGCTTCGACGAAGACTCCGCCAAAAAATGCTTGGATCGCCTTGTCGCCCTATACGGTGATGACGGCCGGGATTTTATCACTGTGGAGTACTGCGGTGATGATTTTCTAGCAGCTTTAGCTGATTCAATGCAAGATACTGAGGAATGGGATGATTTACAGGCAATAGAATCAGAAGCTTGTGGAACTCTGACGAACCTGCTTGATAAAAATGTTGTCGGGTGTAAGTATGAAGATAATGGCATTTCAGGAGGTTGCATCAATATTACCGAAGATTCTCCGGAACCTCAGAAGAACCAGAAAGTGGTGGAGTTGGTTTCAAGTGACGAGGAGATGGACTTCAGTATTTCAAGGGAAAAATGTACACCTCCAGGGTCTTATTTGAATGGTAATATATTTGCAGATCATCAGTCTCCAGTATCAGGGGACCAGATAATCACATTGAACCTCAAGTTTGGAATACCAGCTACTTTTTTGAATTCTCAGCAAACTACTTCGCAAGCAGCAGCTGTCCTTCGGGAGCTAAGAAAAGACAAACCATCATGCAAACTCTTGTATGTGACGCCTGAGAGAATTGCGGGCAATCAATCATTTCTTGAGGTTCTAACATGCATGCATAACAAGGGACAGCTAGCAGGTTTTGTTGTTGATGAGGCGCACTGTGTTAGCCAATGGGGACATGATTTCCGGCCTGATTATCGGGGACTAGGATGCCTTAAGCTGAACTTTCGGGATGTGCCTGTCATGGCGTTGACTGCCACTGCAACCCACTCTGTCCGCGAGGACATCTTAAGCGCTTTAAGAATCCCCCACGCAATTCTTCTTGAAAGAAGCTTTGATAGGCCAAACTTGAAGTATGAAGTCATTGTTAAGACAAAGGAGCCGCTAAAGCAGCTTGGGAAGCTAGTAACGGATCGCTTCAAGAATCAATGTGGAATTGTTTACTGCCTTTCAAAAAGCGAATGTGTTGAGGTCTCAAAATATTTGAACCAGAAATGTAATATTAAGACGGAGTATTACCATGCTGGCTTGTCTGCCCGCCAAAGAGTTGCTGTTCAAAAGAAATGGCACGAGGGAGAGGTCCATATTGTTTGTGCAACTATTGCTTTTGGAATGGGGATAGACAAGCCTGATGTTCGCTTCGTCATCCACAATACGTTGTCTAAATCAATTGAAAGCTATTATCAAGAATCAGGAAGGGCTGGAAGAGACAATCTACCTGCAGTTTGCATTGCTCTCTACCAGAAGAAGGATTTTAGTAGAGTCGTATGCTTGATAAGAAATGGCCAAGGTTATAAAAGGGAAAGCCTTAAGTCGGCAATCGCTCAAGCCAAAAAGATGCAACAATATTGTGAACTAAAGGATGAATGCCGGAGGCAAGCTTTACTCAAACACTTTGGAGAATCTCTTGACAGAAAAGCCTGCAAATACGGATCTAACCCCTGTGATAACTGCCTCAAGAATGGTCTGTGA 1539 0.4373 MGSGKKHDLELEKVRLVSLALDFGFDEDSAKKCLDRLVALYGDDGRDFITVEYCGDDFLAALADSMQDTEEWDDLQAIESEACGTLTNLLDKNVVGCKYEDNGISGGCINITEDSPEPQKNQKVVELVSSDEEMDFSISREKCTPPGSYLNGNIFADHQSPVSGDQIITLNLKFGIPATFLNSQQTTSQAAAVLRELRKDKPSCKLLYVTPERIAGNQSFLEVLTCMHNKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGCLKLNFRDVPVMALTATATHSVREDILSALRIPHAILLERSFDRPNLKYEVIVKTKEPLKQLGKLVTDRFKNQCGIVYCLSKSECVEVSKYLNQKCNIKTEYYHAGLSARQRVAVQKKWHEGEVHIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPAVCIALYQKKDFSRVVCLIRNGQGYKRESLKSAIAQAKKMQQYCELKDECRRQALLKHFGESLDRKACKYGSNPCDNCLKNGL 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5095g00101 512 Pfam RecQ zinc-binding 439 508 IPR032284 -
Pral5095g00101 512 Gene3D - 162 302 IPR027417 -
Pral5095g00101 512 SMART helicmild6 345 427 IPR001650 -
Pral5095g00101 512 Pfam Helicase conserved C-terminal domain 320 426 IPR001650 -
Pral5095g00101 512 NCBIfam RecQ family ATP-dependent DNA helicase 165 509 IPR004589 GO:0004386|GO:0006310
Pral5095g00101 512 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 317 475 IPR001650 -
Pral5095g00101 512 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 184 295 IPR014001 -
Pral5095g00101 512 CDD SF2_C_RecQ 303 436 - -
Pral5095g00101 512 CDD DEXHc_RecQ 165 302 - -
Pral5095g00101 512 FunFam ATP-dependent DNA helicase 303 510 - -
Pral5095g00101 512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 301 509 IPR027417 -
Pral5095g00101 512 PANTHER DNA HELICASE RECQ FAMILY MEMBER 165 509 - -
Pral5095g00101 512 Gene3D - 303 511 IPR027417 -
Pral5095g00101 512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 296 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5095g00101 Pral-Chr5095 408992 414654 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5095g00101 236 445 Eukaryotic Initiation Factors Gene Family AT5G11170 26.389 1.32e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5095g00101 K10899 - gmx:100806070 635.565