Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5095g00100 ATGGGAAGCGGGAAGAAACACGATCTGGAGCTTGAGAAAGTTCGTTTAGTGAGCTTGGCTCTTGATTTTGGCTTCGACGAAGACTCCGCCAAAAAATGCTTGGATCGCCTTGTCGCCCTATACGGTGATGACGGCCGGGATTTTATCACTGTGGAGTACTGCGGTGATGATTTTCTAGCAGCTTTAGCTGATTCAATGCAAGATACTGAGGAATGGGATGATTTACAGGCAATAGAATCAGAAGCTTGTGGAACTCTGACGAACCTGCTTGATAAAAATGTTGTCGGGTGTAAGTATGAAGATAATGGCATTTCAGGAGGTTGCATCAATATTACCGAAGATTCTCCGGAACCTCAGAAGAACCAGAAAGTGGTGGAGTTGGTTTCAAGTGACGAGGAGATGGACTTCAGTATTTCAAGGGAAAAATGTACACCTCCAGGGTCTTATTTGAATGGTAATATATTTGCAGATCATCAGTCTCCAGTATCAGGGCTTCCAGCCACTCTTCAATCAGGTGTTACAGTAGTTGTATCTCCCTTACTTTCACTCATTCAGGACCAGATAATCACATTGAACCTCAAGTTTGGAATACCAGCTACTTTTTTGAATTCTCAGCAAACTACTTCGCAAGCAGCAGCTGTCCTTCGGGAGCTAAGAAAAGACAAACCATCATGCAAACTCTTGTATGTGACGCCTGAGAGAATTGCGGGCAATCAATCATTTCTTGAGGTTCTAACATGCATGCATAACAAGGGACAGCTAGCAGGTTTTGTTGTTGATGAGGCGCACTGTGTTAGCCAATGGGGACATGATTTCCGGCCTGATTATCGGGGACTAGGATGCCTTAAGCTGAACTTTCGGGATGTGCCTGTCATGGCGTTGACTGCCACTGCAACCCACTCTGTCCGCGAGGACATCTTAAGCGCTTTAAGAATCCCCCACGCAATTCTTCTTGAAAGAAGCTTTGATAGGCCAAACTTGAAGTATGAAGTCATTGTTAAGACAAAGGAGCCGCTAAAGCAGCTTGGGAAGCTAGTAACGGATCGCTTCAAGAATCAATGTGGAATTGTTTACTGCCTTTCAAAAAGCGAATGTGTTGAGGTCTCAAAATATTTGAACCAGAAATGTAATATTAAGACGGAGTATTACCATGCTGGCTTGTCTGCCCGCCAAAGAGTTGCTGTTCAAAAGAAATGGCACGAGGGAGAGGTCCATATTGTTTGTGCAACTATTGCTTTTGGAATGGGGATAGACAAGCCTGATGTTCGCTTCGTCATCCACAATACGTTGTCTAAATCAATTGAAAGCTATTATCAAGAATCAGGAAGGGCTGGAAGAGACAATCTACCTGCAGTTTGCATTGCTCTCTACCAGAAGAAGGATTTTAGTAGAGTCGTATGCTTGATAAGAAATGGCCAAGGTTATAAAAGGGAAAGCCTTAAGTCGGCAATCGCTCAAGCCAAAAAGATGCAACAATATTGTGAACTAAAGGATGAATGCCGGAGGCAAGCTTTACTCAAACACTTTGGAGAATCTCTTGACAGAAAAGCCTGCAAATACGGATCTAACCCCTGTGATAACTGCCTCAAGAATGGTCTGTGA 1602 0.437 MGSGKKHDLELEKVRLVSLALDFGFDEDSAKKCLDRLVALYGDDGRDFITVEYCGDDFLAALADSMQDTEEWDDLQAIESEACGTLTNLLDKNVVGCKYEDNGISGGCINITEDSPEPQKNQKVVELVSSDEEMDFSISREKCTPPGSYLNGNIFADHQSPVSGLPATLQSGVTVVVSPLLSLIQDQIITLNLKFGIPATFLNSQQTTSQAAAVLRELRKDKPSCKLLYVTPERIAGNQSFLEVLTCMHNKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGCLKLNFRDVPVMALTATATHSVREDILSALRIPHAILLERSFDRPNLKYEVIVKTKEPLKQLGKLVTDRFKNQCGIVYCLSKSECVEVSKYLNQKCNIKTEYYHAGLSARQRVAVQKKWHEGEVHIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPAVCIALYQKKDFSRVVCLIRNGQGYKRESLKSAIAQAKKMQQYCELKDECRRQALLKHFGESLDRKACKYGSNPCDNCLKNGL 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5095g00100 533 SMART helicmild6 366 448 IPR001650 -
Pral5095g00100 533 Pfam RecQ zinc-binding 460 529 IPR032284 -
Pral5095g00100 533 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 338 496 IPR001650 -
Pral5095g00100 533 CDD DEXHc_RecQ 165 323 - -
Pral5095g00100 533 Pfam DEAD/DEAH box helicase 172 302 IPR011545 GO:0003676|GO:0005524
Pral5095g00100 533 Gene3D - 159 323 IPR027417 -
Pral5095g00100 533 Gene3D - 324 532 IPR027417 -
Pral5095g00100 533 NCBIfam RecQ family ATP-dependent DNA helicase 165 530 IPR004589 GO:0004386|GO:0006310
Pral5095g00100 533 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 165 316 IPR014001 -
Pral5095g00100 533 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 468 IPR027417 -
Pral5095g00100 533 Pfam Helicase conserved C-terminal domain 341 447 IPR001650 -
Pral5095g00100 533 CDD SF2_C_RecQ 324 457 - -
Pral5095g00100 533 SMART ultradead3 114 332 IPR014001 -
Pral5095g00100 533 PANTHER DNA HELICASE RECQ FAMILY MEMBER 164 530 - -
Pral5095g00100 533 FunFam ATP-dependent DNA helicase 324 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5095g00100 Pral-Chr5095 408992 414654 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5095g00100 257 466 Eukaryotic Initiation Factors Gene Family AT5G11170 26.389 1.09e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5095g00100 K10899 - gmx:100806070 670.618