Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5095g00099 ATGGGAAGCGGGAAGAAACACGATCTGGAGCTTGAGAAAGTTCGTTTAGTGAGCTTGGCTCTTGATTTTGGCTTCGACGAAGACTCCGCCAAAAAATGCTTGGATCGCCTTGTCGCCCTATACGGTGATGACGGCCGGGATTTTATCACTGTGGAGTACTGCGGTGATGATTTTCTAGCAGCTTTAGCTGATTCAATGCAAGATACTGAGGAATGGGATGATTTACAGGCAATAGAATCAGAAGCTTGTGGAACTCTGACGAACCTGCTTGATAAAAATGTTGTCGGGTGTAAGTATGAAGATAATGGCATTTCAGGAGGTTGCATCAATATTACCGAAGATTCTCCGGAACCTCAGAAGAACCAGAAAGTGGTGGAGTTGGTTTCAAGTGACGAGGAGATGGACTTCAGTATTTCAAGGGAAAAATGTACACCTCCAGGGTCTTATTTGAATGGTAATATATTTGCAGATCATCAGTCTCCAGTATCAGGGGACTGCACAAGTAGCATCACTCAGGGCTCAATTTCTTCAACTGCCAGCAAAATAAGGTTGTCAGAACCTAAGGATGAAAACCGTACTCTCACTTATGAAGAATTACGGGATCTGGATAACATTGAAATGGCAAATGTTGTTATATTCGGTAATAGGACATTTCGACCATTGCAGCATCAAGCTTGTAAAGTAGCTTTGGCAAAGCAAGATTGTTTTATTCTTATGCCTACGGGGGGTGGTAAATCTCTTTGCTATCAGCTTCCAGCCACTCTTCAATCAGGTGTTACAGTAGTTGTATCTCCCTTACTTTCACTCATTCAGGACCAGATAATCACATTGAACCTCAAGTTTGGAATACCAGCTACTTTTTTGAATTCTCAGCAAACTACTTCGCAAGCAGCAGCTGTCCTTCGGGAGCTAAGAAAAGACAAACCATCATGCAAACTCTTGTATGTGACGCCTGAGAGAATTGCGGGCAATCAATCATTTCTTGAGGTTCTAACATGCATGCATAACAAGGGACAGCTAGCAGGTTTTGTTGTTGATGAGGCGCACTGTGTTAGCCAATGGGGACATGATTTCCGGCCTGATTATCGGGGACTAGGATGCCTTAAGCTGAACTTTCGGGATGTGCCTGTCATGGCGTTGACTGCCACTGCAACCCACTCTGTCCGCGAGGACATCTTAAGCGCTTTAAGAATCCCCCACGCAATTCTTCTTGAAAGAAGCTTTGATAGGCCAAACTTGAAGTATGAAGTCATTGTTAAGACAAAGGAGCCGCTAAAGCAGCTTGGGAAGCTAGTAACGGATCGCTTCAAGAATCAATGTGGAATTGTTTACTGCCTTTCAAAAAGCGAATGTGTTGAGGTCTCAAAATATTTGAACCAGAAATGTAATATTAAGACGGAGTATTACCATGCTGGCTTGTCTGCCCGCCAAAGAGTTGCTGTTCAAAAGAAATGGCACGAGGGAGAGGTCCATATTGTTTGTGCAACTATTGCTTTTGGAATGGGGATAGACAAGCCTGATGTTCGCTTCGTCATCCACAATACGTTGTCTAAATCAATTGAAAGCTATTATCAAGAATCAGGAAGGGCTGGAAGAGACAATCTACCTGCAGTTTGCATTGCTCTCTACCAGAAGAAGGATTTTAGTAGAGTCGTATGCTTGATAAGAAATGGCCAAGGTTATAAAAGGGAAAGCCTTAAGTCGGCAATCGCTCAAGCCAAAAAGATGCAACAATATTGTGAACTAAAGGATGAATGCCGGAGGCAAGCTTTACTCAAACACTTTGGAGAATCTCTTGACAGAAAAGCCTGCAAATACGGATCTAACCCCTGTGATAACTGCCTCAAGAATGGTCTGTGA 1860 0.4323 MGSGKKHDLELEKVRLVSLALDFGFDEDSAKKCLDRLVALYGDDGRDFITVEYCGDDFLAALADSMQDTEEWDDLQAIESEACGTLTNLLDKNVVGCKYEDNGISGGCINITEDSPEPQKNQKVVELVSSDEEMDFSISREKCTPPGSYLNGNIFADHQSPVSGDCTSSITQGSISSTASKIRLSEPKDENRTLTYEELRDLDNIEMANVVIFGNRTFRPLQHQACKVALAKQDCFILMPTGGGKSLCYQLPATLQSGVTVVVSPLLSLIQDQIITLNLKFGIPATFLNSQQTTSQAAAVLRELRKDKPSCKLLYVTPERIAGNQSFLEVLTCMHNKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGCLKLNFRDVPVMALTATATHSVREDILSALRIPHAILLERSFDRPNLKYEVIVKTKEPLKQLGKLVTDRFKNQCGIVYCLSKSECVEVSKYLNQKCNIKTEYYHAGLSARQRVAVQKKWHEGEVHIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPAVCIALYQKKDFSRVVCLIRNGQGYKRESLKSAIAQAKKMQQYCELKDECRRQALLKHFGESLDRKACKYGSNPCDNCLKNGL 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5095g00099 619 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 424 582 IPR001650 -
Pral5095g00099 619 SMART helicmild6 452 534 IPR001650 -
Pral5095g00099 619 Pfam Helicase conserved C-terminal domain 427 533 IPR001650 -
Pral5095g00099 619 CDD DEXHc_RecQ 212 409 - -
Pral5095g00099 619 Gene3D - 177 409 IPR027417 -
Pral5095g00099 619 Pfam DEAD/DEAH box helicase 220 388 IPR011545 GO:0003676|GO:0005524
Pral5095g00099 619 CDD SF2_C_RecQ 410 543 - -
Pral5095g00099 619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 258 554 IPR027417 -
Pral5095g00099 619 FunFam ATP-dependent DNA helicase 410 617 - -
Pral5095g00099 619 SMART ultradead3 214 418 IPR014001 -
Pral5095g00099 619 Gene3D - 410 618 IPR027417 -
Pral5095g00099 619 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 226 402 IPR014001 -
Pral5095g00099 619 Pfam RecQ zinc-binding 546 615 IPR032284 -
Pral5095g00099 619 NCBIfam RecQ family ATP-dependent DNA helicase 212 616 IPR004589 GO:0004386|GO:0006310
Pral5095g00099 619 PANTHER DNA HELICASE RECQ FAMILY MEMBER 201 616 - -
Pral5095g00099 619 FunFam ATP-dependent DNA helicase 199 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5095g00099 Pral-Chr5095 408992 414654 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5095g00099 343 532 Eukaryotic Initiation Factors Gene Family AT5G11170 27.551 1.53e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5095g00099 K10899 - cave:132172585 953.74