LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral5095g00094	ATGGCATCGAAAAGAAAAGCCAATAATTGTGACATTCCGGCTGAAAAGCCAAAGCGGAGATTCGAATTCGAACAGACTGCAGAGGAACAGATTTCTCTGAGCGATGGAGGTAACACATCCGTGCCCTGCAACTGCAAGTGTGGCTGCATCGTTTATCAGGCACGCCTTGAAGCTGTGATCCGACAAACGGTCCGAGAGGAGGTTGCGGCAGCACAACACCAATCTCCAAGGCCTGAACTATTGACGCCTAATAGTAATCTGAGTGGTGAGGTATCCGAAGCCAGACAAAACTTTCAGCTGGAATTCAGCAGAAAACTAAGACAAGAATATTATACACAAACTAAGATATTGGCTGAGGACAACGCACCTCCTCAAATTGTTCTCCTCAACGTTGGATCTCGTTCCATAGTAACGGAGGGTCCCATGTCTTCAACAGAGATAGAGATCTGTGTGGTGCCAGGGGATTTCGGAAGTGGTGACCATCAAAACTGGAGCAGGGAGGAATTCAACGACAACATCATCGTACGACCGAGAGAAGGAAGGGAGGCGCTACTTAAGGGAAAAGATACTAGAGTCACCCTAAAAGATGGAGCTGCTTTTATTCCTAAGATTGAGTTTACTGATATCTCACGCTGGGTCAGAACCGGAACCTTCAGATTAGCAGCCAGATCCAAAGAAGCAGACGTTAAGGAAGCTATAAGCCAACCTTTCGTCGTCAAAGATAAAAGAGGAGCGTCGATTATGAAACACGCCATACCATCCTTGAAGAGTGAGATTTGGCGCTTGAAAAAAATAGGGAGAGGCGGAGAACTTCACAAACGATTGTTACAGAATGGAATAGAAACAGTTAAGGATTTTATGCGACTTCACACGATCAACCCGTCTTCGTTAAAAGAGAAATTCGGCAACATTCCGAGCGGCAGATGGGAGGCCATAATGGAACATGCTACAGCTTGTGTTATTGACGATAACGTGCATTACGGCTATCACACAGCAGAAAGACAACTAGACTTCGTCTTTAATTCCATCTATGAGGTCGTAAGGGTGAGCTTCGATAATGGTCAGACTTATCGTTCACCGGAAACCTTCACCTCGGTGGAGAAGCGTTTGGTGGAGGTGGCCAAGAAGGAAGCATATGAAAATGAGAAAGATTTTGTGGCACTGCCAGTGAATCTGGAGGAGCTAGGAACTGTACAAACTGGGGAGTCCAGTAATGGCATGCCACCAGATGGAGGGGCTCCCCAGCAAGTTGACCTCCCAGCCACCCAACAAGGGCAAGAATATGAGTGGGATCTGCTCTACTCTCCATATTCATCTCTAGATCATTTTCTTTCCAACCCCTTGGTGTTGGAAGCAGGCTCTAGCAGTCCTCTCCATTGTCTCCTTCATTCTGATGCGCCTCCTTCCACCCACGACGGACGCAGAAGCAGATGGAGTAAGATTCGGGCTGCTGCGTTATGGCTCATGTCTCCCGCACGCACATCTCTTTCCCGCCAGCGCCATCCCTTCTAA	1512	0.4762	MASKRKANNCDIPAEKPKRRFEFEQTAEEQISLSDGGNTSVPCNCKCGCIVYQARLEAVIRQTVREEVAAAQHQSPRPELLTPNSNLSGEVSEARQNFQLEFSRKLRQEYYTQTKILAEDNAPPQIVLLNVGSRSIVTEGPMSSTEIEICVVPGDFGSGDHQNWSREEFNDNIIVRPREGREALLKGKDTRVTLKDGAAFIPKIEFTDISRWVRTGTFRLAARSKEADVKEAISQPFVVKDKRGASIMKHAIPSLKSEIWRLKKIGRGGELHKRLLQNGIETVKDFMRLHTINPSSLKEKFGNIPSGRWEAIMEHATACVIDDNVHYGYHTAERQLDFVFNSIYEVVRVSFDNGQTYRSPETFTSVEKRLVEVAKKEAYENEKDFVALPVNLEELGTVQTGESSNGMPPDGGAPQQVDLPATQQGQEYEWDLLYSPYSSLDHFLSNPLVLEAGSSSPLHCLLHSDAPPSTHDGRRSRWSKIRAAALWLMSPARTSLSRQRHPF	503

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral5095g00094	503	Pfam	Calmodulin binding protein central domain	255	319	IPR046830	-
	Pral5095g00094	503	Pfam	Calmodulin binding protein-like N-terminal domain	98	242	IPR046831	-
	Pral5095g00094	503	Pfam	Calmodulin binding protein C-terminal domain	327	383	IPR046829	-
	Pral5095g00094	503	PANTHER	OS02G0177800 PROTEIN	43	430	IPR012416	GO:0005516

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral5095g00094	Pral-Chr5095	389893	394115	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral5095g00094	56	381	Calmodulin-binding Proteins	AT5G57580	35.329	4.97e-55	193

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral5095g00094	-		-	pcin:129307043	441.425