Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5095g00088 ATGCTCCGCTTAGTACCGAGGATCCTGGTCATTCAAGGACTGCCTCCAGCCTGGGTGGATGTATCTGAAGAAATATCAGCAAATGTGCAACGTGCACGCACAAAAATGGCAGAGCTGGCCAAAGCTCATGCAAAGGCGTTAATGCCATCATTTGGAGATGGCAAGGAGGAACAACGAACCATTGAAACTCTAACTCATGAGATAACTGACTTGATAAAGCGATCAGAGAGGCGACTGCAGAGACTTTCTGCTACCGGGCCTTCTGAGGATTCCAGTGTGAGGAAGAACGTGCAGCGCTCTCTAGCTACTGACCTTCAGAACCTCTCTGTAGAGCTCCGCAAGAAACAATCAAATTATTTGAAGCGACTTAGACAGCAAAAAGAGGGACAAGATGGGGTGGATCTAGAGATCAACATAAATGGAAGTAAATCCAGATTTGAAGATGATGCTTTGGACAATATGGTATTTAACGAGCACCAGATGGCCAAGCTGAAAAAAAGTGAAGCATTCACAGTAGAAAGAGAAAAGGAGATCCAACAGGTTGTGGAATCAGTAAACGAGCTTGCTCAAATTATGAAAGATCTGTCTGTACTAGTAATAGACCAGGGAACCATTGTTGATCGGATAGACTACAACATTCAGAATGTTGCAACTACAGTTGAGGATGGCCTTAAACAGTTGCAGAAGGCCGAGAGAACACAAAGGAAGGGGGGCATGGTGATGTGTGCGACGGTGCTTATTATCATGTGCTTCGTTATGCTGGTTCTCCTAATCCTCAAGGAAATATTGTTGTGA 795 0.4465 MLRLVPRILVIQGLPPAWVDVSEEISANVQRARTKMAELAKAHAKALMPSFGDGKEEQRTIETLTHEITDLIKRSERRLQRLSATGPSEDSSVRKNVQRSLATDLQNLSVELRKKQSNYLKRLRQQKEGQDGVDLEININGSKSRFEDDALDNMVFNEHQMAKLKKSEAFTVEREKEIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVEDGLKQLQKAERTQRKGGMVMCATVLIIMCFVMLVLLILKEILL 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5095g00088 264 ProSitePatterns Syntaxin / epimorphin family signature. 174 213 IPR006012 GO:0005484|GO:0006886|GO:0016020
Pral5095g00088 264 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 168 230 IPR000727 -
Pral5095g00088 264 SUPERFAMILY t-snare proteins 14 223 IPR010989 GO:0016020|GO:0016192
Pral5095g00088 264 Pfam SNARE domain 204 256 IPR000727 -
Pral5095g00088 264 FunFam Syntaxin-43 15 222 - -
Pral5095g00088 264 CDD SNARE_syntaxin16 173 229 - -
Pral5095g00088 264 SMART tSNARE_6 163 230 IPR000727 -
Pral5095g00088 264 Gene3D - 15 222 - -
Pral5095g00088 264 SMART SynN_4 9 124 IPR006011 GO:0016020
Pral5095g00088 264 PANTHER SYNTAXIN 22 250 IPR045242 -
Pral5095g00088 264 Coils Coil 22 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5095g00088 Pral-Chr5095 366903 370454 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5095g00088 13 264 SNARE and Associated Proteins AT5G26980 79.365 4.57e-144 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5095g00088 K08489 - gmx:100796741 435.261