Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5095g00087 ATGGCGACGAGAAACCGCACTTTGCTCTATAGGAAGTACAGAGATGCATTGAAGAGTGTTCGGGTTCCGTCGAGTTCTGCGGCCTCGACGAGTTCCGGCGGTGCTGGTGGTCCGGTGATTGAATTGGTCAGCACGTCGCTTCTGAATCAGAATCGTTCTTATGCTCCGCTTAGTACCGAGGATCCTGGTCATTCAAGTAAGGGTCCACTTACTGTAGGACTGCCTCCAGCCTGGGTGGATGTATCTGAAGAAATATCAGCAAATGTGCAACGTGCACGCACAAAAATGGCAGAGCTGGCCAAAGCTCATGCAAAGGCGTTAATGCCATCATTTGGAGATGGCAAGGAGGAACAACGAACCATTGAAACTCTAACTCATGAGATAACTGACTTGATAAAGCGATCAGAGAGGCGACTGCAGAGACTTTCTGCTACCGGGCCTTCTGAGGATTCCAGTGTGAGGAAGAACGTGCAGCGCTCTCTAGCTACTGACCTTCAGAACCTCTCTGTAGAGCTCCGCAAGAAACAATCAAATTATTTGAAGCGACTTAGACAGCAAAAAGAGGGACAAGATGGGGTGGATCTAGAGATCAACATAAATGGAAGTAAATCCAGATTTGAAGATGATGCTTTGGACAATATGGTATTTAACGAGCACCAGATGGCCAAGCTGAAAAAAAGTGAAGCATTCACAGTAGAAAGAGAAAAGGAGATCCAACAGGTTGTGGAATCAGTAAACGAGCTTGCTCAAATTATGAAAGATCTGTCTGTACTAGTAATAGACCAGGGAACCATTGTTGATCGGATAGACTACAACATTCAGAATGTTGCAACTACAGTTGAGGATGGCCTTAAACAGTTGCAGAAGGCCGAGAGAACACAAAGGAAGGGGGGCATGGTGATGTGTGCGACGGTGCTTATTATCATGTGCTTCGTTATGCTGGTTCTCCTAATCCTCAAGGAAATATTGTTGTGA 975 0.4605 MATRNRTLLYRKYRDALKSVRVPSSSAASTSSGGAGGPVIELVSTSLLNQNRSYAPLSTEDPGHSSKGPLTVGLPPAWVDVSEEISANVQRARTKMAELAKAHAKALMPSFGDGKEEQRTIETLTHEITDLIKRSERRLQRLSATGPSEDSSVRKNVQRSLATDLQNLSVELRKKQSNYLKRLRQQKEGQDGVDLEININGSKSRFEDDALDNMVFNEHQMAKLKKSEAFTVEREKEIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVEDGLKQLQKAERTQRKGGMVMCATVLIIMCFVMLVLLILKEILL 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5095g00087 324 Gene3D - 75 282 - -
Pral5095g00087 324 PANTHER SYNTAXIN 81 309 IPR045242 -
Pral5095g00087 324 Coils Coil 82 102 - -
Pral5095g00087 324 Pfam SNARE domain 264 316 IPR000727 -
Pral5095g00087 324 CDD SNARE_syntaxin16 233 289 - -
Pral5095g00087 324 SMART tSNARE_6 223 290 IPR000727 -
Pral5095g00087 324 FunFam Syntaxin-43 75 282 - -
Pral5095g00087 324 ProSitePatterns Syntaxin / epimorphin family signature. 234 273 IPR006012 GO:0005484|GO:0006886|GO:0016020
Pral5095g00087 324 SMART SynN_4 69 184 IPR006011 GO:0016020
Pral5095g00087 324 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 228 290 IPR000727 -
Pral5095g00087 324 SUPERFAMILY t-snare proteins 74 283 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5095g00087 Pral-Chr5095 366738 370454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5095g00087 1 324 SNARE and Associated Proteins AT5G26980 77.914 0.0 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5095g00087 K08489 - gmx:100796741 532.717