Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5095g00073 ATGAGTAGCCTGTCAAGTCGCACTATTTATGTTGGCAATCTTCCTGGTGATATTCGTTTGAGAGAAGTTGAGGATCTTTTCTACAAGTATGGTCCTCTTGTTGACATTGATTTGAAAATCCCTCCAAGACCACCTGGTTATGCTTTTGTAAAGTTTGAGGATCGTCGTGATGCCGAAGATGCTATTCGCTATCGAGATGGTTATAATTTTGATGGTTTCCGATTGCGAGTTGAATTTGCGCATGGTGGGCGGGGATATTCTTCATCGGTTGACCGTTACAGCAGCTATAGTGGTAGTGGTGGTAGCCGGGGAATTTCCAGGCGTTCGGACTATCGCGTTCTGGTCACTGGATTACCCCCTTCAGCTTCATGGCAAGACTTGAAGGATCACATGCGTAAAGCTGGTGATGTATGTTTCTCTGAAGTCTTTCGGGAGCGTGGTGGCATGACTGGGATCGTGGATTATACTAATTATGATGATATGAAGTATGCTATCAGGAAGCTTGATGATTCAGAATTCCGGAATGCATTTTCTCGTGCATACATACGGGTGAGAGAATATGATCGACGGAGTTATTCTAGGAGTCTCAGCCGTGATTCTAGGAGGAGCTATTCCAGAAGCTATAGCCGCAGTCCTTATAGGTCACGAAGTCGAAGCCGCAGCTGGAGTCGGGATTACAGTTATAGAGGCAGGAGCAGAAGTTTGTCACCGAAGGTGAAACGCTCAAGACGTTCAGTATCTCTTTCAAGATCCCGCTCGAGATCCAGATCTCCAAATTCATCTGTACTTTTCTTTGTGTAA 801 0.4532 MSSLSSRTIYVGNLPGDIRLREVEDLFYKYGPLVDIDLKIPPRPPGYAFVKFEDRRDAEDAIRYRDGYNFDGFRLRVEFAHGGRGYSSSVDRYSSYSGSGGSRGISRRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSEVFRERGGMTGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYIRVREYDRRSYSRSLSRDSRRSYSRSYSRSPYRSRSRSRSWSRDYSYRGRSRSLSPKVKRSRRSVSLSRSRSRSRSPNSSVLFFV 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5095g00073 266 MobiDBLite consensus disorder prediction 234 250 - -
Pral5095g00073 266 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 1 110 - -
Pral5095g00073 266 SUPERFAMILY RNA-binding domain, RBD 6 179 IPR035979 GO:0003676
Pral5095g00073 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Pral5095g00073 266 CDD RRM2_SF2_plant_like 111 186 - -
Pral5095g00073 266 MobiDBLite consensus disorder prediction 233 266 - -
Pral5095g00073 266 FunFam serine/arginine-rich splicing factor SR34A-like 111 188 - -
Pral5095g00073 266 MobiDBLite consensus disorder prediction 251 266 - -
Pral5095g00073 266 Gene3D - 2 109 IPR012677 -
Pral5095g00073 266 Gene3D - 110 188 IPR012677 -
Pral5095g00073 266 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 6 258 - -
Pral5095g00073 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Pral5095g00073 266 SMART rrm1_1 112 181 IPR000504 GO:0003723
Pral5095g00073 266 SMART rrm1_1 8 78 IPR000504 GO:0003723
Pral5095g00073 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Pral5095g00073 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5095g00073 Pral-Chr5095 297622 302203 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5095g00073 8 80 Eukaryotic Initiation Factors Gene Family AT3G11400 34.211 1.58e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5095g00073 K12890 - gmx:100794282 313.923