Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5095g00072 ATGAGTAGCCTGTCAAGTCGCACTATTTATGTTGGCAATCTTCCTGGTGATATTCGTTTGAGAGAAGTTGAGGATCTTTTCTACAAGTATGGTCCTCTTGTTGACATTGATTTGAAAATCCCTCCAAGACCACCTGGTTATGCTTTTGTAAAGTTTGAGGATCGTCGTGATGCCGAAGATGCTATTCGCTATCGAGATGGTTATAATTTTGATGGTTTCCGATTGCGAGTTGAATTTGCGCATGGTGGGCGGGGATATTCTTCATCGGTTGACCGTTACAGCAGCTATAGTGGTAGTGGTGGTAGCCGGGGAATTTCCAGGCGTTCGGACTATCGCGTTCTGGTCACTGGATTACCCCCTTCAGCTTCATGGCAAGACTTGAAGGATCACATGCGTAAAGCTGGTGATGTATGTTTCTCTGAAGTCTTTCGGGAGCGTGGTGGCATGACTGGGATCGTGGATTATACTAATTATGATGATATGAAGTATGCTATCAGGAAGCTTGATGATTCAGAATTCCGGAATGCATTTTCTCGTGCATACATACGGGTGAGAGAATATGATCGACGGAGTTATTCTAGGAGTCTCAGCCGTGATTCTAGGAGGAGCTATTCCAGAAGCTATAGCCGCAGTCCTTATAGGTCACGAAGTCGAAGCCGCAGCTGGAGTCGGGATTACAGTTATAGAGGCAGGAGCAGAAGTTTGTCACCGAAGGTGAAACGCTCAAGACGTTCAGTATCTCTTTCAAGATCCCGCTCGAGATCCAGATCTCCAAATTCATCTCCTTCACCTTATAGAAGTTACAGTCCTCGCCGTAAAAGCTTGTCGCAATCCCGTTCGTCTTCGGTGAAGTCTGATCGCAGCAGATCTGCTGACTCTGGATATCGCTATTGA 894 0.4609 MSSLSSRTIYVGNLPGDIRLREVEDLFYKYGPLVDIDLKIPPRPPGYAFVKFEDRRDAEDAIRYRDGYNFDGFRLRVEFAHGGRGYSSSVDRYSSYSGSGGSRGISRRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSEVFRERGGMTGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYIRVREYDRRSYSRSLSRDSRRSYSRSYSRSPYRSRSRSRSWSRDYSYRGRSRSLSPKVKRSRRSVSLSRSRSRSRSPNSSPSPYRSYSPRRKSLSQSRSSSVKSDRSRSADSGYRY 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5095g00072 297 MobiDBLite consensus disorder prediction 234 250 - -
Pral5095g00072 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Pral5095g00072 297 SUPERFAMILY RNA-binding domain, RBD 6 179 IPR035979 GO:0003676
Pral5095g00072 297 CDD RRM2_SF2_plant_like 111 186 - -
Pral5095g00072 297 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 6 289 - -
Pral5095g00072 297 Gene3D - 2 110 IPR012677 -
Pral5095g00072 297 FunFam serine/arginine-rich splicing factor SR34A-like 111 188 - -
Pral5095g00072 297 MobiDBLite consensus disorder prediction 192 297 - -
Pral5095g00072 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Pral5095g00072 297 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 1 110 - -
Pral5095g00072 297 SMART rrm1_1 112 181 IPR000504 GO:0003723
Pral5095g00072 297 SMART rrm1_1 8 78 IPR000504 GO:0003723
Pral5095g00072 297 MobiDBLite consensus disorder prediction 251 284 - -
Pral5095g00072 297 Gene3D - 111 188 IPR012677 -
Pral5095g00072 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Pral5095g00072 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5095g00072 Pral-Chr5095 297176 302203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5095g00072 8 80 Eukaryotic Initiation Factors Gene Family AT3G11400 34.211 1.13e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5095g00072 K12890 - gmx:100794282 313.923