Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5095g00063 ATGGATGGTAAGGACGTATCTTCCGATCAAGTCATTGCAGAAATGCTAGAAATGGGGTTTGAATATGCCAATATTATGGAAGCTTTGAAAGCAGTAGGTCTATCTACTCATAGTGCCGTAGAGTTTATCCTGAATAATGCTGGTAGAGATAGCGGTAGGGCATCTCCTTCTAGGATTAATAATTCCAAATTTCATAAGGGCAACGAGAAGGGCCTCAGAAAAGGGGACTTGGCCTCATCCCATTCCGCAAGTTACGTTCGACAGTCCAGTATCCTGGACCATCTCCAAGCCACTAATGAATCAACAAAAAGAAAGATAGATATTGTACGTGGTGTGCCGTTCAGTAGGTTGGAAGTTCCTTCAGGCACTGTGGAAGAGGTCACAGAGCCTTTCTCTGACATGGATGCTGATTCCAATATCTTGTCAGGAAATTGTAAGGCTGATTCCCTGGATGAATTGGATGGTTCATCAGACTGGGAGCAGAAAGCTAGCAATCTCTTGCAGGAGCATTTTGGCTTTTCATGCTTAAAGAGTTTCCAAAAGGAAGCCCTGACTGCCTGGGTAGCTCATAAAGACTGTCTTGTCCTGGCTGCAACGGGATCTGGAAAGTCTTTGTGCTTTCAGATTCCTGCATTGCTATCTGGGAAAGTGGTGGTTGTGATTTCGCCCTTAATAAGCCTGATGCATGATCAATGCTTAAAGCTAGCAAGACATGGGATCAGCGCCTGCTTTCTTGGGTCTGGGCAACCTGACAATACTGTTGAACGGAAGGCAATGAGAGGCATGTATAGTATAGTATATGTATGCCCAGAGACAGTTCTGAGATTGATTGAACCACTACAGAAGCTTGCAAGAAGTCATGGTATTGCTTTATTCGCAATTGATGAAGTGCATTGTGTTTCTAAATGGGGCCATGATTTCCGGCCAGACTACAGACGGCTGTCTGCATTAAGGGAAAATTTCAGTACTCACAAGCTAGAATTCCTGAAGTTTGATATACCTCTAATGGCTTTGACTGCTACAGCCACCAACCTGGTTCGAGAGGATGTTTTGAAGTCACTACATATGTCAAAAGAAACAAAGATTGTTCTCACTTCCTTTTTCCGGCCTAATTTACGGTTCACTGTAAGGCATAGTGGGACATCTTCATCTTCGTATGGGAAAGATTTTCATGAGCTAATTGAACTATATGGTAAAAAGCAAAAGTCAGTTGACAAGAAAAAAGTTTTTATATCAGAGGAATCACCAGATGTTTTCATTAGCTCTGATGCCAGCGGAATCAGAGAGGTTGACAGTCTTTCTCCTTGTGATTTGGATGCTGACCAAGATGATTACAGTGAAGGAGGTATTAATGTATTGCATTCAAGAAGCACTAGTGGTGCTATAAATGGAAAAGAATTGTCAGTCGAGTACCTGGAAAACGACATTGAGATCTTTCAAAGTGTGGATGACTGGGATGTTGCCTGTGGTGAATTCTGTGGACAACCTTCTCAAAAGGAATGGAAGTTATCTGAGATTGCTGATCCACCCAAGAAATTGGAAGAAAGACTTAGACTTCTTGAAGGGCCTTTAGAGCGAGGACCAACTATCATATATGTACCCACCAGGAAAGAAACGCTGAACATTGCAAAGTATCTATGTGAATTTGGTGTGAAGTCTGCTGCTTATAATGCATCGCTGCCCAAATCACATCTAAGAAGGGTACACAAGGATTTTCATGAAAACACACTAGAGGTTGTTGTTGCAACAGTAGCTTTTGGAATGGGGATTGACAAATTGAATGTTAGAAGAATCATCCATTATGGTTGGCCACAGAGTTTAGAAGCCTATTACCAAGAAGCTGGTCGGGCTGGACGAGATGGTAAATTAGCAGATTGCATTCTTTATGCGAACCTATCAAGGTTGCCGTCACTTTTGCCCAGTCATAGAAGTGAAGATCAGTTGAAACATGCCTATGTCATGTTGTCTGATTGTTTCAGATATGGAATGAATACTTCCTCTTGTAGGGCTGAGACTCTCGTGAAGTACTTTGGAGAGGATTTCCATAATCAAAAGTGTCTGATATGTGATGTGTGTGTTGATGGACCACCTCAAATGCAAAATCTGAGAGAGGAGGCATGTACTTTACTCCAAGCGGTAGCTGAACATTATGGACAATGCTCTGATGTGGATGGCTTATATGATGACGATATACATTTTGACTCTGAAGGAAGAAAAATTAAAGGGAGGCTTAGTCTTAATATGGTTGTTAGGAAGATAAGGGGGCAGTCTCAAAAATTTTTGACCACTGATACGTTATGGTGGAGAGGTCTCGCTCGAGTTATGGAACAGAAAGGATACATCAGGGAAGGAGATGACAAGGAATGA 2367 0.4208 MDGKDVSSDQVIAEMLEMGFEYANIMEALKAVGLSTHSAVEFILNNAGRDSGRASPSRINNSKFHKGNEKGLRKGDLASSHSASYVRQSSILDHLQATNESTKRKIDIVRGVPFSRLEVPSGTVEEVTEPFSDMDADSNILSGNCKADSLDELDGSSDWEQKASNLLQEHFGFSCLKSFQKEALTAWVAHKDCLVLAATGSGKSLCFQIPALLSGKVVVVISPLISLMHDQCLKLARHGISACFLGSGQPDNTVERKAMRGMYSIVYVCPETVLRLIEPLQKLARSHGIALFAIDEVHCVSKWGHDFRPDYRRLSALRENFSTHKLEFLKFDIPLMALTATATNLVREDVLKSLHMSKETKIVLTSFFRPNLRFTVRHSGTSSSSYGKDFHELIELYGKKQKSVDKKKVFISEESPDVFISSDASGIREVDSLSPCDLDADQDDYSEGGINVLHSRSTSGAINGKELSVEYLENDIEIFQSVDDWDVACGEFCGQPSQKEWKLSEIADPPKKLEERLRLLEGPLERGPTIIYVPTRKETLNIAKYLCEFGVKSAAYNASLPKSHLRRVHKDFHENTLEVVVATVAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLADCILYANLSRLPSLLPSHRSEDQLKHAYVMLSDCFRYGMNTSSCRAETLVKYFGEDFHNQKCLICDVCVDGPPQMQNLREEACTLLQAVAEHYGQCSDVDGLYDDDIHFDSEGRKIKGRLSLNMVVRKIRGQSQKFLTTDTLWWRGLARVMEQKGYIREGDDKE 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5095g00063 788 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 184 360 IPR014001 -
Pral5095g00063 788 SUPERFAMILY UBA-like 8 47 IPR009060 GO:0005515
Pral5095g00063 788 SMART helicmild6 540 621 IPR001650 -
Pral5095g00063 788 SMART ultradead3 172 377 IPR014001 -
Pral5095g00063 788 Pfam DEAD/DEAH box helicase 179 343 IPR011545 GO:0003676|GO:0005524
Pral5095g00063 788 Gene3D - 135 368 IPR027417 -
Pral5095g00063 788 FunFam ATP-dependent DNA helicase 146 368 - -
Pral5095g00063 788 Pfam Helicase conserved C-terminal domain 513 620 IPR001650 -
Pral5095g00063 788 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 215 632 IPR027417 -
Pral5095g00063 788 Pfam RecQ zinc-binding 634 692 IPR032284 -
Pral5095g00063 788 Gene3D - 632 788 IPR036388 -
Pral5095g00063 788 NCBIfam RecQ family ATP-dependent DNA helicase 166 381 IPR004589 GO:0004386|GO:0006310
Pral5095g00063 788 CDD DEXHc_RecQ 167 367 - -
Pral5095g00063 788 MobiDBLite consensus disorder prediction 50 78 - -
Pral5095g00063 788 FunFam ATP-dependent DNA helicase 503 630 - -
Pral5095g00063 788 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 512 659 IPR001650 -
Pral5095g00063 788 Gene3D - 5 47 - -
Pral5095g00063 788 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 5 46 IPR015940 -
Pral5095g00063 788 PANTHER DNA HELICASE RECQ FAMILY MEMBER 154 732 - -
Pral5095g00063 788 Gene3D - 503 630 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5095g00063 Pral-Chr5095 232408 238705 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5095g00063 498 621 Eukaryotic Initiation Factors Gene Family AT5G11170 29.839 6.11e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5095g00063 K10900 - qsa:O6P43_011098 1026.93