Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5095g00062 ATGGATGGTAAGGACGTATCTTCCGATCAAGTCATTGCAGAAATGCTAGAAATGGGGTTTGAATATGCCAATATTATGGAAGCTTTGAAAGCAGTAGGTCTATCTACTCATAGTGCCGTAGAGTTTATCCTGAATAATGCTGGTAGAGATAGCGGTAGGGCATCTCCTTCTAGGATTAATAATTCCAAATTTCATAAGGGCAACGAGAAGGGCCTCAGAAAAGGGGACTTGGCCTCATCCCATTCCGCAAGTTACGTTCGACAGTCCAGTATCCTGGACCATCTCCAAGCCACTAATGAATCAACAAAAAGAAAGATAGATATTGTACGTGGTGTGCCGTTCAGTAGGTTGGAAGTTCCTTCAGGCACTGTGGAAGAGGTCACAGAGCCTTTCTCTGACATGGATGCTGATTCCAATATCTTGTCAGGAAATTGTAAGGCTGATTCCCTGGATGAATTGGATGGTTCATCAGACTGGGAGCAGAAAGCTAGCAATCTCTTGCAGGAGCATTTTGGCTTTTCATGCTTAAAGAGTTTCCAAAAGGAAGCCCTGACTGCCTGGGTAGCTCATAAAGACTGTCTTGTCCTGGCTGCAACGGGATCTGGAAAGTCTTTGTGCTTTCAGATTCCTGCATTGCTATCTGGGAAAGTGGTGGTTGTGATTTCGCCCTTAATAAGCCTGATGCATGATCAATGCTTAAAGCTAGCAAGACATGGGATCAGCGCCTGCTTTCTTGGGTCTGGGCAACCTGACAATACTGTTGAACGGAAGGCAATGAGAGGCATGTATAGTATAGTATATGTATGCCCAGAGACAGTTCTGAGATTGATTGAACCACTACAGAAGCTTGCAAGAAGTCATGGTATTGCTTTATTCGCAATTGATGAAGTGCATTGTGTTTCTAAATGGGGCCATGATTTCCGGCCAGACTACAGACGGCTGTCTGCATTAAGGGAAAATTTCAGTACTCACAAGCTAGAATTCCTGAAGTTTGATATACCTCTAATGGCTTTGACTGCTACAGCCACCAACCTGGTTCGAGAGGATGTTTTGAAGTCACTACATATGTCAAAAGAAACAAAGATTGTTCTCACTTCCTTTTTCCGGCCTAATTTACGGTTCACTGTAAGGCATAGTGGGACATCTTCATCTTCGTATGGGAAAGATTTTCATGAGCTAATTGAACTATATGGTAAAAAGCAAAAGTCAGTTGACAAGAAAAAAGTTTTTATATCAGAGGAATCACCAGATGTTTTCATTAGCTCTGATGCCAGCGGAATCAGAGAGGTTGACAGTCTTTCTCCTTGTGATTTGGATGCTGACCAAGATGATTACAGTGAAGGAGGTATTAATGTATTGCATTCAAGAAGCACTAGTGGTGCTATAAATGGAAAAGAATTGTCAGTCGAGTACCTGGAAAACGACATTGAGATCTTTCAAAGTGTGGATGACTGGGATGTTGCCTGTGGTGAATTCTGTGGACAACCTTCTCAAAAGGAATGGAAGTTATCTGAGATTGCTGATCCACCCAAGAAATTGGAAGAAAGACTTAGACTTCTTGAAGGGCCTTTAGAGCGAGGACCAACTATCATATATGTACCCACCAGGAAAGAAACGCTGAACATTGCAAAGTATCTATGTGAATTTGGTGTGAAGTCTGCTGCTTATAATGCATCGCTGCCCAAATCACATCTAAGAAGGGTACACAAGGATTTTCATGAAAACACACTAGAGGTTGTTGTTGCAACAGTAGCTTTTGGAATGGGGATTGACAAATTGAATGTTAGAAGAATCATCCATTATGGTTGGCCACAGAGTTTAGAAGCCTATTACCAAGAAGCTGGTCGGGCTGGACGAGATGGTAAATTAGCAGATTGCATTCTTTATGCGAACCTATCAAGGTTGCCGTCACTTTTGCCCAGTCATAGAAGTGAAGATCAGTTGAAACATGCCTATGTCATGTTGTCTGATTGTTTCAGATGTGATGTGTGTGTTGATGGACCACCTCAAATGCAAAATCTGAGAGAGGAGGCATGTACTTTACTCCAAGCGGTAGCTGAACATTATGGACAATGCTCTGATGTGGATGGCTTATATGATGACGATATACATTTTGACTCTGAAGGAAGAAAAATTAAAGGGAGGCTTAGTCTTAATATGGTTGTTAGGAAGATAAGGGGGCAGTCTCAAAAATTTTTGACCACTGATACGTTATGGTGGAGAGGTCTCGCTCGAGTTATGGAACAGAAAGGATACATCAGGGAAGGAGATGACAAGAGTCATGTGCAGATTAAGTACCCGGAACCAACAGAAGTGGGATTGAAATTCGTCAAGTCAAATCGTGAGCAAGCTTTCTATGTTTACCCTGAGGCGGATATGCTGCTTGCGGCGAAAAGCAGCCACAGCAAACCATACTCCTCATTCTCGGACTGGGGAAAAGGTTGGGCAGATCCTGAGATTCGTCGCCAGAGGCTCCAAAAAATGCAACTCGATAGGAAGTTAACGATGCTGCCAACTCCTAGAAAATCGCACAAGAGAAAAGCTATCAGAGTGAGGCCTGACCTGAGGACTTGTCGTGGGAGACTAGCGGCAAAACTCTCCAAACGTACGTGA 2613 0.4305 MDGKDVSSDQVIAEMLEMGFEYANIMEALKAVGLSTHSAVEFILNNAGRDSGRASPSRINNSKFHKGNEKGLRKGDLASSHSASYVRQSSILDHLQATNESTKRKIDIVRGVPFSRLEVPSGTVEEVTEPFSDMDADSNILSGNCKADSLDELDGSSDWEQKASNLLQEHFGFSCLKSFQKEALTAWVAHKDCLVLAATGSGKSLCFQIPALLSGKVVVVISPLISLMHDQCLKLARHGISACFLGSGQPDNTVERKAMRGMYSIVYVCPETVLRLIEPLQKLARSHGIALFAIDEVHCVSKWGHDFRPDYRRLSALRENFSTHKLEFLKFDIPLMALTATATNLVREDVLKSLHMSKETKIVLTSFFRPNLRFTVRHSGTSSSSYGKDFHELIELYGKKQKSVDKKKVFISEESPDVFISSDASGIREVDSLSPCDLDADQDDYSEGGINVLHSRSTSGAINGKELSVEYLENDIEIFQSVDDWDVACGEFCGQPSQKEWKLSEIADPPKKLEERLRLLEGPLERGPTIIYVPTRKETLNIAKYLCEFGVKSAAYNASLPKSHLRRVHKDFHENTLEVVVATVAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLADCILYANLSRLPSLLPSHRSEDQLKHAYVMLSDCFRCDVCVDGPPQMQNLREEACTLLQAVAEHYGQCSDVDGLYDDDIHFDSEGRKIKGRLSLNMVVRKIRGQSQKFLTTDTLWWRGLARVMEQKGYIREGDDKSHVQIKYPEPTEVGLKFVKSNREQAFYVYPEADMLLAAKSSHSKPYSSFSDWGKGWADPEIRRQRLQKMQLDRKLTMLPTPRKSHKRKAIRVRPDLRTCRGRLAAKLSKRT 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5095g00062 870 PANTHER DNA HELICASE RECQ FAMILY MEMBER 154 722 - -
Pral5095g00062 870 NCBIfam RecQ family ATP-dependent DNA helicase 166 381 IPR004589 GO:0004386|GO:0006310
Pral5095g00062 870 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 184 360 IPR014001 -
Pral5095g00062 870 SMART helicmild6 540 621 IPR001650 -
Pral5095g00062 870 SMART ultradead3 172 377 IPR014001 -
Pral5095g00062 870 Gene3D - 641 787 IPR036388 -
Pral5095g00062 870 Gene3D - 503 630 IPR027417 -
Pral5095g00062 870 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 215 632 IPR027417 -
Pral5095g00062 870 FunFam ATP-dependent DNA helicase 503 630 - -
Pral5095g00062 870 SUPERFAMILY UBA-like 8 47 IPR009060 GO:0005515
Pral5095g00062 870 CDD DEXHc_RecQ 167 367 - -
Pral5095g00062 870 MobiDBLite consensus disorder prediction 50 78 - -
Pral5095g00062 870 Gene3D - 5 47 - -
Pral5095g00062 870 Gene3D - 135 368 IPR027417 -
Pral5095g00062 870 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 512 675 IPR001650 -
Pral5095g00062 870 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 5 46 IPR015940 -
Pral5095g00062 870 Pfam Helicase conserved C-terminal domain 513 620 IPR001650 -
Pral5095g00062 870 FunFam ATP-dependent DNA helicase 146 368 - -
Pral5095g00062 870 Pfam DEAD/DEAH box helicase 179 343 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5095g00062 Pral-Chr5095 232408 239627 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5095g00062 498 621 Eukaryotic Initiation Factors Gene Family AT5G11170 29.839 5.22e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5095g00062 K10900 - qsa:O6P43_011098 1092.41