Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pral5095g00062 | ATGGATGGTAAGGACGTATCTTCCGATCAAGTCATTGCAGAAATGCTAGAAATGGGGTTTGAATATGCCAATATTATGGAAGCTTTGAAAGCAGTAGGTCTATCTACTCATAGTGCCGTAGAGTTTATCCTGAATAATGCTGGTAGAGATAGCGGTAGGGCATCTCCTTCTAGGATTAATAATTCCAAATTTCATAAGGGCAACGAGAAGGGCCTCAGAAAAGGGGACTTGGCCTCATCCCATTCCGCAAGTTACGTTCGACAGTCCAGTATCCTGGACCATCTCCAAGCCACTAATGAATCAACAAAAAGAAAGATAGATATTGTACGTGGTGTGCCGTTCAGTAGGTTGGAAGTTCCTTCAGGCACTGTGGAAGAGGTCACAGAGCCTTTCTCTGACATGGATGCTGATTCCAATATCTTGTCAGGAAATTGTAAGGCTGATTCCCTGGATGAATTGGATGGTTCATCAGACTGGGAGCAGAAAGCTAGCAATCTCTTGCAGGAGCATTTTGGCTTTTCATGCTTAAAGAGTTTCCAAAAGGAAGCCCTGACTGCCTGGGTAGCTCATAAAGACTGTCTTGTCCTGGCTGCAACGGGATCTGGAAAGTCTTTGTGCTTTCAGATTCCTGCATTGCTATCTGGGAAAGTGGTGGTTGTGATTTCGCCCTTAATAAGCCTGATGCATGATCAATGCTTAAAGCTAGCAAGACATGGGATCAGCGCCTGCTTTCTTGGGTCTGGGCAACCTGACAATACTGTTGAACGGAAGGCAATGAGAGGCATGTATAGTATAGTATATGTATGCCCAGAGACAGTTCTGAGATTGATTGAACCACTACAGAAGCTTGCAAGAAGTCATGGTATTGCTTTATTCGCAATTGATGAAGTGCATTGTGTTTCTAAATGGGGCCATGATTTCCGGCCAGACTACAGACGGCTGTCTGCATTAAGGGAAAATTTCAGTACTCACAAGCTAGAATTCCTGAAGTTTGATATACCTCTAATGGCTTTGACTGCTACAGCCACCAACCTGGTTCGAGAGGATGTTTTGAAGTCACTACATATGTCAAAAGAAACAAAGATTGTTCTCACTTCCTTTTTCCGGCCTAATTTACGGTTCACTGTAAGGCATAGTGGGACATCTTCATCTTCGTATGGGAAAGATTTTCATGAGCTAATTGAACTATATGGTAAAAAGCAAAAGTCAGTTGACAAGAAAAAAGTTTTTATATCAGAGGAATCACCAGATGTTTTCATTAGCTCTGATGCCAGCGGAATCAGAGAGGTTGACAGTCTTTCTCCTTGTGATTTGGATGCTGACCAAGATGATTACAGTGAAGGAGGTATTAATGTATTGCATTCAAGAAGCACTAGTGGTGCTATAAATGGAAAAGAATTGTCAGTCGAGTACCTGGAAAACGACATTGAGATCTTTCAAAGTGTGGATGACTGGGATGTTGCCTGTGGTGAATTCTGTGGACAACCTTCTCAAAAGGAATGGAAGTTATCTGAGATTGCTGATCCACCCAAGAAATTGGAAGAAAGACTTAGACTTCTTGAAGGGCCTTTAGAGCGAGGACCAACTATCATATATGTACCCACCAGGAAAGAAACGCTGAACATTGCAAAGTATCTATGTGAATTTGGTGTGAAGTCTGCTGCTTATAATGCATCGCTGCCCAAATCACATCTAAGAAGGGTACACAAGGATTTTCATGAAAACACACTAGAGGTTGTTGTTGCAACAGTAGCTTTTGGAATGGGGATTGACAAATTGAATGTTAGAAGAATCATCCATTATGGTTGGCCACAGAGTTTAGAAGCCTATTACCAAGAAGCTGGTCGGGCTGGACGAGATGGTAAATTAGCAGATTGCATTCTTTATGCGAACCTATCAAGGTTGCCGTCACTTTTGCCCAGTCATAGAAGTGAAGATCAGTTGAAACATGCCTATGTCATGTTGTCTGATTGTTTCAGATGTGATGTGTGTGTTGATGGACCACCTCAAATGCAAAATCTGAGAGAGGAGGCATGTACTTTACTCCAAGCGGTAGCTGAACATTATGGACAATGCTCTGATGTGGATGGCTTATATGATGACGATATACATTTTGACTCTGAAGGAAGAAAAATTAAAGGGAGGCTTAGTCTTAATATGGTTGTTAGGAAGATAAGGGGGCAGTCTCAAAAATTTTTGACCACTGATACGTTATGGTGGAGAGGTCTCGCTCGAGTTATGGAACAGAAAGGATACATCAGGGAAGGAGATGACAAGAGTCATGTGCAGATTAAGTACCCGGAACCAACAGAAGTGGGATTGAAATTCGTCAAGTCAAATCGTGAGCAAGCTTTCTATGTTTACCCTGAGGCGGATATGCTGCTTGCGGCGAAAAGCAGCCACAGCAAACCATACTCCTCATTCTCGGACTGGGGAAAAGGTTGGGCAGATCCTGAGATTCGTCGCCAGAGGCTCCAAAAAATGCAACTCGATAGGAAGTTAACGATGCTGCCAACTCCTAGAAAATCGCACAAGAGAAAAGCTATCAGAGTGAGGCCTGACCTGAGGACTTGTCGTGGGAGACTAGCGGCAAAACTCTCCAAACGTACGTGA | 2613 | 0.4305 | MDGKDVSSDQVIAEMLEMGFEYANIMEALKAVGLSTHSAVEFILNNAGRDSGRASPSRINNSKFHKGNEKGLRKGDLASSHSASYVRQSSILDHLQATNESTKRKIDIVRGVPFSRLEVPSGTVEEVTEPFSDMDADSNILSGNCKADSLDELDGSSDWEQKASNLLQEHFGFSCLKSFQKEALTAWVAHKDCLVLAATGSGKSLCFQIPALLSGKVVVVISPLISLMHDQCLKLARHGISACFLGSGQPDNTVERKAMRGMYSIVYVCPETVLRLIEPLQKLARSHGIALFAIDEVHCVSKWGHDFRPDYRRLSALRENFSTHKLEFLKFDIPLMALTATATNLVREDVLKSLHMSKETKIVLTSFFRPNLRFTVRHSGTSSSSYGKDFHELIELYGKKQKSVDKKKVFISEESPDVFISSDASGIREVDSLSPCDLDADQDDYSEGGINVLHSRSTSGAINGKELSVEYLENDIEIFQSVDDWDVACGEFCGQPSQKEWKLSEIADPPKKLEERLRLLEGPLERGPTIIYVPTRKETLNIAKYLCEFGVKSAAYNASLPKSHLRRVHKDFHENTLEVVVATVAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLADCILYANLSRLPSLLPSHRSEDQLKHAYVMLSDCFRCDVCVDGPPQMQNLREEACTLLQAVAEHYGQCSDVDGLYDDDIHFDSEGRKIKGRLSLNMVVRKIRGQSQKFLTTDTLWWRGLARVMEQKGYIREGDDKSHVQIKYPEPTEVGLKFVKSNREQAFYVYPEADMLLAAKSSHSKPYSSFSDWGKGWADPEIRRQRLQKMQLDRKLTMLPTPRKSHKRKAIRVRPDLRTCRGRLAAKLSKRT | 870 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pral5095g00062 | 870 | PANTHER | DNA HELICASE RECQ FAMILY MEMBER | 154 | 722 | - | - | |
Pral5095g00062 | 870 | NCBIfam | RecQ family ATP-dependent DNA helicase | 166 | 381 | IPR004589 | GO:0004386|GO:0006310 | |
Pral5095g00062 | 870 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 184 | 360 | IPR014001 | - | |
Pral5095g00062 | 870 | SMART | helicmild6 | 540 | 621 | IPR001650 | - | |
Pral5095g00062 | 870 | SMART | ultradead3 | 172 | 377 | IPR014001 | - | |
Pral5095g00062 | 870 | Gene3D | - | 641 | 787 | IPR036388 | - | |
Pral5095g00062 | 870 | Gene3D | - | 503 | 630 | IPR027417 | - | |
Pral5095g00062 | 870 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 215 | 632 | IPR027417 | - | |
Pral5095g00062 | 870 | FunFam | ATP-dependent DNA helicase | 503 | 630 | - | - | |
Pral5095g00062 | 870 | SUPERFAMILY | UBA-like | 8 | 47 | IPR009060 | GO:0005515 | |
Pral5095g00062 | 870 | CDD | DEXHc_RecQ | 167 | 367 | - | - | |
Pral5095g00062 | 870 | MobiDBLite | consensus disorder prediction | 50 | 78 | - | - | |
Pral5095g00062 | 870 | Gene3D | - | 5 | 47 | - | - | |
Pral5095g00062 | 870 | Gene3D | - | 135 | 368 | IPR027417 | - | |
Pral5095g00062 | 870 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 512 | 675 | IPR001650 | - | |
Pral5095g00062 | 870 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 5 | 46 | IPR015940 | - | |
Pral5095g00062 | 870 | Pfam | Helicase conserved C-terminal domain | 513 | 620 | IPR001650 | - | |
Pral5095g00062 | 870 | FunFam | ATP-dependent DNA helicase | 146 | 368 | - | - | |
Pral5095g00062 | 870 | Pfam | DEAD/DEAH box helicase | 179 | 343 | IPR011545 | GO:0003676|GO:0005524 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pral5095g00062 | Pral-Chr5095 | 232408 | 239627 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pral5095g00062 | 498 | 621 | Eukaryotic Initiation Factors Gene Family | AT5G11170 | 29.839 | 5.22e-07 | 50.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pral5095g00062 | K10900 | - | qsa:O6P43_011098 | 1092.41 |