Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5095g00054 ATGGATCATGCTCGAACGACCTCGGGGAATGCCGAGGATAATGTGGGGATTCCAGATGACTTGCGCTGCAAGAGGTCGGATGGGAAACAATGGAGATGCACTGCCATGTCCATGCCAGATAAAACCGTCTGTGAGAAGCACTACATCCAAGCAAAGAAGAGGGCAGCTAATTCTGCCATGAGAGCGAGTCTGAAGAAGGCTAAGAGAAAGTCATTAGGTGAGAGTGACATTTATCTTGAGAGCAAGAGTGAGGATTTTGACATTCCACTTGCTAGCATGAAAATTGAGCAGCATTCGGCCTCTGGAAAGAACAAGGCATCAAAAAATCAGTTCCGTTATACAGCAGAGGCACCGACCACAAGGACCACCTCTGCTCGTAATGCTCTGAAGCCAAATGACGATTCACCAGATGAGATTCCCCAGTATGAAGAAAATTGGATGCCTTATGAGTCGCCACCTGCTTCTCGAATGGACTTGCCCAGGAAAAGATCTCAAACAAATTTAGATGTCAATGCTGCAACAGAATACTCGGATGGAAGTACAGATTCCTCTGGTGAAACTGGTGGGCAAACTTGCCATCAATGTCGAAGGAATGACAGAGACAAAGTTATTTGGTGTTCAAGATGTGATAGGAGAGGATACTGTGAGCACTGTATATTAACATGCTACTCAGACATGTCATTCGACGAAATTGAGAGGACCTGTCCTGCCTGCCGTGGCACCTGTAATTGCAAAGTTTGCTTACGTGGTGATAATTCAATAAAGGTTCGGATTCGGGAAATACCTGTTCTAGACAAGTTACAATATCTCCACGTGTTGCTGTCATCAGTACTTCCTGTGGTAAAGCAGATCCATCATGAGCAGTGTTATGAAGTTGAACTCGAAAAGAAGTTGCGTGGGATTGAAATAGATCTTCCCAGGACAAAGCTGAATGCAGATGAGCAAATGTGCTGCAACTTCTGTCGGATACCCATTACTGATTATCACCGGCACTGCCCAAATTGTACATATGATTTATGCCTTAATTGCTGTCGAGATCTTCGAGAAGCAAATGTAAATGCAGAAAAAGTAACCCCAACAGATGAAGCAAAACTTTCAGAGCAGAATTTGCTATATAAGTTACCTGATTGGAGATCCAACAGTGATGGTAGTATTCCATGCCCCCCAAAGAAATATGGTGGCTGTGGTTATTCACCATTGGCTTTAAGCCGCATCTTCAAAATGAATTGGGTTGCGAAATTGGTAAAAAATGTGGAGGAGATGGTTGGTGGCTGCCAGATTAATGAAGTTGGAGGATCAGAAACCAAGTTGAATGATCTCAAACTTTGCCAATATTCCCACAGGGAGGCCAGTGATGATAATTATTTGTATTGTCCGGCATCTGAAGATCTCAAAACTGATGGGATAGGAAATTTTAGGAAGCACTGGAAAAATGGTGAACCCATTATTGTCAAGCAAGTATTTGATAGGTCATCAAGCTGGGATCCAATGGCCATATGGAAAGGGGTTCGAGAGACAGCAGATGAGAAAATGAAAGAAGTTGAGAACCGAGTGGTTAAGGCCGTGGATTGTTTAACCTGGTCAGAGATAGATATTGAACTTAACGAATTCATGAAAGGATACTTTGAGGGGCATGCCCATGAAAATGGTTGGCCACGGTTATTGAAGTTGAAGGATTGGCCTTCGCCTAGTGCATCTGAAGAATTTTTATTGCATCAAAGACCGGAATTTATCAGCAAACTGCCTTTACTTGAATATATTCACTCGAAATGGGGCCTTCTTAATGTTGCAGCTAAATTGCCTCATTACTCCTTGCAGAATGATGTAGGACCCAAGATTTATATATCATATGGGGTCAATGAGGAACTTGGTAGTGGTGACTCAGTGACCAATCTCCACTTCAATATGCGTGACATGGTCTATCTTTTGGTCCATACAAGTGAAGTGAAGCTGAAGAAGTCGCAGGGAACAAAATGTGAAAAGATGCAGAAGTCATCTGATGCAAATGAGTTGCCTGTGGATCCGCAAACATGTTCAGTGGGAAGTCCAGCTGATTCATCACTTGGCACAGAAAGAAACGAACTGGATTTGGATTCAAATGAGAAGACGTCAATTGTCAATAAAGAATTGGAAAATTATTCTAGTGCTGAAGGGGATATGATCAATTCTGAACTTCCAGGCTGGGATGGAGATGTTGCGGAGAAAACAGATCCTGGAGTTCTTTGGGATGTCTTTCGTCGGCAGGATGTTCCAAAGCTGACTGAATTTCTAAAAACTCGTTGGAAAGAATTTGCGCAGCCAGATGATACAGTAAATAAATTTTTTACAAGGCCTCTTTATGATGGAGTTATTTTTCTCAACGGACACCATAAAAGGGAGTTGAAGGAAGAATTTGGAGTGGAACCATGGTCGTTTGAACAGTGTGTGGGGGAAGCTGTATTTGTTCCTGCTGGGTGCCCTTTCCAAGCAAGGAATGTTCAGTCCACTGTTCAGCTGGGCCTTGATTTCTTATCGCCAGAAAGCCTCGGGGAGGCTGTGAGATTGGCTGAGGATGTCCGCTGTCTGCCAAATGAACATGAAGCCAAGCATCAAGTATTGGAGGTTGGGAAGATATCTCTTTATGCAGCTAGTTCAGCCATCAAAGAAGTTCAGAAACTTGTTCTTGACCCAAAACTTGGTGCAGATATTGGATTTGGGGATCCCAATCTGACTGCAATGGTTGCTGAGAACTACGACAAGATGGTTAAGCGGAGACAAATTTCTTGTGCTTGA 2772 0.4322 MDHARTTSGNAEDNVGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRASLKKAKRKSLGESDIYLESKSEDFDIPLASMKIEQHSASGKNKASKNQFRYTAEAPTTRTTSARNALKPNDDSPDEIPQYEENWMPYESPPASRMDLPRKRSQTNLDVNAATEYSDGSTDSSGETGGQTCHQCRRNDRDKVIWCSRCDRRGYCEHCILTCYSDMSFDEIERTCPACRGTCNCKVCLRGDNSIKVRIREIPVLDKLQYLHVLLSSVLPVVKQIHHEQCYEVELEKKLRGIEIDLPRTKLNADEQMCCNFCRIPITDYHRHCPNCTYDLCLNCCRDLREANVNAEKVTPTDEAKLSEQNLLYKLPDWRSNSDGSIPCPPKKYGGCGYSPLALSRIFKMNWVAKLVKNVEEMVGGCQINEVGGSETKLNDLKLCQYSHREASDDNYLYCPASEDLKTDGIGNFRKHWKNGEPIIVKQVFDRSSSWDPMAIWKGVRETADEKMKEVENRVVKAVDCLTWSEIDIELNEFMKGYFEGHAHENGWPRLLKLKDWPSPSASEEFLLHQRPEFISKLPLLEYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGVNEELGSGDSVTNLHFNMRDMVYLLVHTSEVKLKKSQGTKCEKMQKSSDANELPVDPQTCSVGSPADSSLGTERNELDLDSNEKTSIVNKELENYSSAEGDMINSELPGWDGDVAEKTDPGVLWDVFRRQDVPKLTEFLKTRWKEFAQPDDTVNKFFTRPLYDGVIFLNGHHKRELKEEFGVEPWSFEQCVGEAVFVPAGCPFQARNVQSTVQLGLDFLSPESLGEAVRLAEDVRCLPNEHEAKHQVLEVGKISLYAASSAIKEVQKLVLDPKLGADIGFGDPNLTAMVAENYDKMVKRRQISCA 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5095g00054 923 MobiDBLite consensus disorder prediction 1 20 - -
Pral5095g00054 923 SMART cupin_9 570 853 IPR003347 -
Pral5095g00054 923 ProSiteProfiles Zinc finger RING-type profile. 192 239 IPR001841 -
Pral5095g00054 923 SUPERFAMILY Clavaminate synthase-like 473 862 - -
Pral5095g00054 923 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 19 887 IPR045109 GO:0032454|GO:0033169
Pral5095g00054 923 Pfam WRC 18 58 IPR014977 -
Pral5095g00054 923 MobiDBLite consensus disorder prediction 669 689 - -
Pral5095g00054 923 Gene3D Cupin 452 862 - -
Pral5095g00054 923 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 188 252 IPR018866 -
Pral5095g00054 923 MobiDBLite consensus disorder prediction 661 694 - -
Pral5095g00054 923 ProSiteProfiles WRC domain profile. 17 61 IPR014977 -
Pral5095g00054 923 MobiDBLite consensus disorder prediction 98 130 - -
Pral5095g00054 923 MobiDBLite consensus disorder prediction 98 160 - -
Pral5095g00054 923 Pfam JmjC domain, hydroxylase 739 832 IPR003347 -
Pral5095g00054 923 ProSiteProfiles JmjC domain profile. 563 853 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5095g00054 Pral-Chr5095 210265 217776 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5095g00054 18 58 GRF Transcription Factor Family AT3G13960 46.341 3.10e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pral5095g00054 JmjC 3.6e-06 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5095g00054 K15601 - qsa:O6P43_007503 1380.54