Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5095g00053 ATGGATCATGCTCGAACGACCTCGGGGAATGCCGAGGATAATGTGGGGATTCCAGATGACTTGCGCTGCAAGAGGTCGGATGGGAAACAATGGAGATGCACTGCCATGTCCATGCCAGATAAAACCGTCTGTGAGAAGCACTACATCCAAGCAAAGAAGAGGGCAGCTAATTCTGCCATGAGAGCGAGTCTGAAGAAGGCTAAGAGAAAGTCATTAGGTGAGAGTGACATTTATCTTGAGAGCAAGAGTGAGGATTTTGACATTCCACTTGCTAGCATGAAAATTGAGCAGCATTCGGCCTCTGGAAAGAACAAGGCATCAAAAAATCAGTTCCGTTATACAGCAGAGGCACCGACCACAAGGACCACCTCTGCTCGTAATGCTCTGAAGCCAAATGACGATTCACCAGATGAGATTCCCCAGTATGAAGAAAATTGGATGCCTTATGAGTCGCCACCTGCTTCTCGAATGGACTTGCCCAGGAAAAGATCTCAAACAAATTTAGATGTCAATGCTGCAACAGAATACTCGGATGGAAGTACAGATTCCTCTGGTGAAACTGGTGGGCAAACTTGCCATCAATGTCGAAGGAATGACAGAGACAAAGTTATTTGGTGTTCAAGATGTGATAGGAGAGGATACTGTGAGCACTGTATATTAACATGGTGGGCATATTATACTGACATGTCATTCGACGAAATTGAGAGGACCTGTCCTGCCTGCCGTGGCACCTGTAATTGCAAAGTTTGCTTACGTGGTGATAATTCAATAAAGGTTCGGATTCGGGAAATACCTGTTCTAGACAAGTTACAATATCTCCACGTGTTGCTGTCATCAGTACTTCCTGTGGTAAAGCAGATCCATCATGAGCAGTGTTATGAAGTTGAACTCGAAAAGAAGTTGCGTGGGATTGAAATAGATCTTCCCAGGACAAAGCTGAATGCAGATGAGCAAATGTGCTGCAACTTCTGTCGGATACCCATTACTGATTATCACCGGCACTGCCCAAATTGTACATATGATTTATGCCTTAATTGCTGTCGAGATCTTCGAGAAGCAAATGTAAATGCAGAAAAAGTAACCCCAACAGATGAAGCAAAACTTTCAGAGCAGAATTTGCTATATAAGTTACCTGATTGGAGATCCAACAGTGATGGTAGTATTCCATGCCCCCCAAAGAAATATGGTGGCTGTGGTTATTCACCATTGGCTTTAAGCCGCATCTTCAAAATGAATTGGGTTGCGAAATTGGTAAAAAATGTGGAGGAGATGGTTGGTGGCTGCCAGATTAATGAAGTTGGAGGATCAGAAACCAAGTTGAATGATCTCAAACTTTGCCAATATTCCCACAGGGAGGCCAGTGATGATAATTATTTGTATTGTCCGGCATCTGAAGATCTCAAAACTGATGGGATAGGAAATTTTAGGAAGCACTGGAAAAATGGTGAACCCATTATTGTCAAGCAAGTATTTGATAGGTCATCAAGCTGGGATCCAATGGCCATATGGAAAGGGGTTCGAGAGACAGCAGATGAGAAAATGAAAGAAGTTGAGAACCGAGTGGTTAAGGCCGTGGATTGTTTAACCTGGTCAGAGATAGATATTGAACTTAACGAATTCATGAAAGGATACTTTGAGGGGCATGCCCATGAAAATGGTTGGCCACGGTTATTGAAGTTGAAGGATTGGCCTTCGCCTAGTGCATCTGAAGAATTTTTATTGCATCAAAGACCGGAATTTATCAGCAAACTGCCTTTACTTGAATATATTCACTCGAAATGGGGCCTTCTTAATGTTGCAGCTAAATTGCCTCATTACTCCTTGCAGAATGATGTAGGACCCAAGATTTATATATCATATGGGGTCAATGAGGAACTTGGTAGTGGTGACTCAGTGACCAATCTCCACTTCAATATGCGTGACATGGTCTATCTTTTGGTCCATACAAGTGAAGTGAAGCTGAAGAAGTCGCAGGGAACAAAATGTGAAAAGATGCAGAAGTCATCTGATGCAAATGAGTTGCCTGTGGATCCGCAAACATGTTCAGTGGGAAGTCCAGCTGATTCATCACTTGGCACAGAAAGAAACGAACTGGATTTGGATTCAAATGAGAAGACGTCAATTGTCAATAAAGAATTGGAAAATTATTCTAGTGCTGAAGGGGATATGATCAATTCTGAACTTCCAGGCTGGGATGGAGATGTTGCGGAGAAAACAGATCCTGGAGTTCTTTGGGATGTCTTTCGTCGGCAGGATGTTCCAAAGCTGACTGAATTTCTAAAAACTCGTTGGAAAGAATTTGCGCAGCCAGATGATACAGTAAATAAATTTTTTACAAGGCCTCTTTATGATGGAGTTATTTTTCTCAACGGACACCATAAAAGGGAGTTGAAGGAAGAATTTGGAGTGGAACCATGGTCGTTTGAACAGTGTGTGGGGGAAGCTGTATTTGTTCCTGCTGGGTGCCCTTTCCAAGCAAGGAATGTTCAGTCCACTGTTCAGCTGGGCCTTGATTTCTTATCGCCAGAAAGCCTCGGGGAGGCTGTGAGATTGGCTGAGGATGTCCGCTGTCTGCCAAATGAACATGAAGCCAAGCATCAAGTATTGGAGGTTGGGAAGATATCTCTTTATGCAGCTAGTTCAGCCATCAAAGAAGTTCAGAAACTTGTTCTTGACCCAAAACTTGGTGCAGATATTGGATTTGGGGATCCCAATCTGACTGCAATGGTTGCTGAGAACTACGACAAGATGGTTAAGCGGAGACAAATTTCTTGTGCTTGA 2781 0.4319 MDHARTTSGNAEDNVGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRASLKKAKRKSLGESDIYLESKSEDFDIPLASMKIEQHSASGKNKASKNQFRYTAEAPTTRTTSARNALKPNDDSPDEIPQYEENWMPYESPPASRMDLPRKRSQTNLDVNAATEYSDGSTDSSGETGGQTCHQCRRNDRDKVIWCSRCDRRGYCEHCILTWWAYYTDMSFDEIERTCPACRGTCNCKVCLRGDNSIKVRIREIPVLDKLQYLHVLLSSVLPVVKQIHHEQCYEVELEKKLRGIEIDLPRTKLNADEQMCCNFCRIPITDYHRHCPNCTYDLCLNCCRDLREANVNAEKVTPTDEAKLSEQNLLYKLPDWRSNSDGSIPCPPKKYGGCGYSPLALSRIFKMNWVAKLVKNVEEMVGGCQINEVGGSETKLNDLKLCQYSHREASDDNYLYCPASEDLKTDGIGNFRKHWKNGEPIIVKQVFDRSSSWDPMAIWKGVRETADEKMKEVENRVVKAVDCLTWSEIDIELNEFMKGYFEGHAHENGWPRLLKLKDWPSPSASEEFLLHQRPEFISKLPLLEYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGVNEELGSGDSVTNLHFNMRDMVYLLVHTSEVKLKKSQGTKCEKMQKSSDANELPVDPQTCSVGSPADSSLGTERNELDLDSNEKTSIVNKELENYSSAEGDMINSELPGWDGDVAEKTDPGVLWDVFRRQDVPKLTEFLKTRWKEFAQPDDTVNKFFTRPLYDGVIFLNGHHKRELKEEFGVEPWSFEQCVGEAVFVPAGCPFQARNVQSTVQLGLDFLSPESLGEAVRLAEDVRCLPNEHEAKHQVLEVGKISLYAASSAIKEVQKLVLDPKLGADIGFGDPNLTAMVAENYDKMVKRRQISCA 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5095g00053 926 MobiDBLite consensus disorder prediction 664 697 - -
Pral5095g00053 926 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 19 890 IPR045109 GO:0032454|GO:0033169
Pral5095g00053 926 MobiDBLite consensus disorder prediction 1 20 - -
Pral5095g00053 926 ProSiteProfiles Zinc finger RING-type profile. 192 242 IPR001841 -
Pral5095g00053 926 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 188 255 IPR018866 -
Pral5095g00053 926 ProSiteProfiles JmjC domain profile. 566 856 IPR003347 -
Pral5095g00053 926 SUPERFAMILY Clavaminate synthase-like 476 865 - -
Pral5095g00053 926 Gene3D Cupin 455 865 - -
Pral5095g00053 926 MobiDBLite consensus disorder prediction 672 692 - -
Pral5095g00053 926 Pfam WRC 18 58 IPR014977 -
Pral5095g00053 926 ProSiteProfiles WRC domain profile. 17 61 IPR014977 -
Pral5095g00053 926 MobiDBLite consensus disorder prediction 98 130 - -
Pral5095g00053 926 Pfam JmjC domain, hydroxylase 742 835 IPR003347 -
Pral5095g00053 926 MobiDBLite consensus disorder prediction 98 160 - -
Pral5095g00053 926 SMART cupin_9 573 856 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5095g00053 Pral-Chr5095 210265 217790 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5095g00053 18 58 GRF Transcription Factor Family AT3G13960 46.341 3.03e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pral5095g00053 JmjC 3.6e-06 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5095g00053 K15601 - qsa:O6P43_007503 1370.53