Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5095g00051 ATGTCAAACATCACGAGCTGTGACAGTGGGAGTTTCAGAGAAGATGCAGCTATTAAACACCGTCCTCAACTCACTGCTGCTCATCACCAGTTTCACAGTCCAACTTCTCTTACTTCAACCACCACTAACAGCAACGGTTCCAACGCCAATTCCCAACTTCCTCCTCCGGTTAAGAGGAAGAGAAACCTCCCAGGAAACCCAGATCCCAATGCCGAAGTGATTGCTCTATCACCAAACGCCCTAATGGCGAGAAACCGATTCTTGTGTGAAATCTGCAACAAAGGATTCCAAAGGGATCAAAATCTGCAATTGCACCGGCGAGGCCATAACCTGCCATGGAAGCTCAAGCAAAGGCCGACCACAGAAGTTCGAAAGCGAGTTTATGTTTGTCCAGAGCCTTCGTGCGTCCACCATAACCCAAGTCGAGCACTGGGTGACCTTACTGGCATCAAGAAGCATTTCTCAAGAAAACATGGCGAGAAGAAATGGAAGTGTGAGAAGTGCTCCAAGAGATACGCAGTACAGTCCGACTGGAAAGCTCATTCTAAGATCTGTGGTACTAGGGAATACAAATGTGATTGTGGCACCATCTTCTCCAGACGAGATAGCTTTATCACCCATAGAGCTTTTTGCGACGCGTTGGCCGAGGAGAATAACAAAGCCAACAATGAAGGACCATATTCAAACTCACAAGGTCAACATCAAATCCCAAATCCTGTTTCTTCACTGCCAATCAACTCCAACTTCAACCCACAAAAAGGGACGCCCCACTATAATCATTCTGATGAAATTAAGCATCCAATATCGCACCTTCATCAGGAGCTCCTAGAATTCCCAGCAAAAGCATTCAATTACATGACTGGAAGCGTATTCGCAAGAAGTCTTTCGTCCAACAGTTCCTGTTCATCACTTCAACTGGGTTCAAATAATTCCCTGAGCATGTTGGAAGAAATCGAGCACCAAACAGGAGGTGGATCGGCCCACATGTCAGCGACGGCATTGTTGCAGAAAGCAGCTCTAATGGGAGCAACTATGAGTAACAGTCCTAACAGCTCGGGCATGGCACCCTCTTCATTGGGGCATAATAGTAACCACTACTACATGAACAGTGGACAAGCTGATATGTCATCATCTCAGTATTTCGGAGGAAATAATAATAGCTTTGGGATGAACAATGTGGATATGTTCAATGCTATAATGGACCAAAGCAAGGCGTTGTCGAAGATGATGGAGCATAACAGTCGAAGCAGTAATAATGCGAATAACCATGGAGTTTTGCACAGTGCAATGAACGGTGGGCCAGCAAGTAAAGGAAGTGGGGGGGATGTAACGACTCTGGACTTGTTGGGGATTGGTGCAGAGGAGGTGGTGATGCTTTTCTATGGCGCCAACCAGGCGGAAAAGGCTGAAACGCCTTTAGGCCAGGGCAACCAAAAATAA 1440 0.4646 MSNITSCDSGSFREDAAIKHRPQLTAAHHQFHSPTSLTSTTTNSNGSNANSQLPPPVKRKRNLPGNPDPNAEVIALSPNALMARNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRPTTEVRKRVYVCPEPSCVHHNPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKANNEGPYSNSQGQHQIPNPVSSLPINSNFNPQKGTPHYNHSDEIKHPISHLHQELLEFPAKAFNYMTGSVFARSLSSNSSCSSLQLGSNNSLSMLEEIEHQTGGGSAHMSATALLQKAALMGATMSNSPNSSGMAPSSLGHNSNHYYMNSGQADMSSSQYFGGNNNSFGMNNVDMFNAIMDQSKALSKMMEHNSRSSNNANNHGVLHSAMNGGPASKGSGGDVTTLDLLGIGAEEVVMLFYGANQAEKAETPLGQGNQK 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5095g00051 479 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 109 IPR013087 -
Pral5095g00051 479 Gene3D Classic Zinc Finger 140 222 - -
Pral5095g00051 479 MobiDBLite consensus disorder prediction 28 55 - -
Pral5095g00051 479 MobiDBLite consensus disorder prediction 412 440 - -
Pral5095g00051 479 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Pral5095g00051 479 FunFam protein indeterminate-domain 12-like 66 134 - -
Pral5095g00051 479 SMART c2h2final6 128 158 IPR013087 -
Pral5095g00051 479 SMART c2h2final6 163 183 IPR013087 -
Pral5095g00051 479 SMART c2h2final6 87 109 IPR013087 -
Pral5095g00051 479 MobiDBLite consensus disorder prediction 25 70 - -
Pral5095g00051 479 SUPERFAMILY beta-beta-alpha zinc fingers 86 183 IPR036236 -
Pral5095g00051 479 MobiDBLite consensus disorder prediction 412 426 - -
Pral5095g00051 479 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 41 458 IPR031140 -
Pral5095g00051 479 FunFam protein indeterminate-domain 5, chloroplastic-like 141 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5095g00051 Pral-Chr5095 205546 208524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5095g00051 58 220 IDZ Gene Family AT5G66730 87.117 1.56e-108 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral5095g00051 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5095g00051 - - pcin:129304381 680.248