Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5095g00050 ATGTTTGCTTCAGTAGCGGATACAGGACATGAAAGCAGTGGAGTGTCAGGATCCATTATGATTCCAAAGCGGTTCGTCTGGCCTTACGGGGGAAGAAAGGTGTTTCTTAGTGGCTCTTTCACAAGGTGGTCTGAACATATACCTATGTCTCCTATGGAGGGATGTCCTACTGCATTTCAAGTTATTTGCAGCTTAATGCCGGGATATCATCAGTACAAATTTAATGTAGATGGTGAGTGGCAGCATGATGAGCAGCAACCATTTGTAACTGGGAGCTATGGAGTAGTGAATACTATTTTCTTGACAAGAGAACCGGATGCTTTGCCTTCCATCTTTATTCCTGAGATGCCTGGCAGATCCCACATGGAGGTTGATAATGATGTCTTTCGGCTTGTGGAAGCTAATTTAAGGGTGTCAGAGTCTGATCTGGAGGTCTCTTGCCACCGTATAGCAGTATTCTTGTCTACATATACTGCTTATGAGTTGCTTCCTGACTCAGGCAAGGTCGTTGCCTTTGATATCAACCTACCAGTTAAGCAGGCGTTCCATGTCCTTTATGAACAGGGCATACCTATGGCTCCTTTATGGGATTTTAGCAAGAGCCAGTTTGTTGGAGTGCTTAGTGCTATGGACTTCATTCTAATATTGAAAGAGCTGGGTAATCATGGGTCAAATTTGACTGAAGAGCAACTTGAGACTCATACTATAGCAGCATGGAAAGAGGTGAAGGTACAACAAAGCAGAACACTGGACAGTGGGAGATCATATCCTCAGCACTTTGTTCATGCTGGCCCTCATGAGTGCCTGAAAGATGTGGCTTTGAAAATTTTGCAAAACAATGTGGCATCAGTTCCTATTATTCAGTCCGGATCACAGGATGGTTCATTTCCTCAGCTGCTACATCTTGCTTCGTTGTCAGAAATCCTAAAATGTATTTGCAGGCACTTTAAGCATTCCTCCAGTTCCTTGCCCATTTTTCATCTGCCAATCGGTTCATTACCTATGGGTACATGGGTGCCAAAAGTTGGGGAATCAAATACACAGCCACTTGCAATGCTTAGGTCAAATGCATCTCTTGGTGCTGCCCTGTCTCTGTTAATTCAAGCTGAAGTTAGTTCAATACCCATTGTGGATGGTAATGACTCGTTGCTTGACATATATTCAAGAAGTGATATTACTGCACTGGCTAAAGATAAAGCTTATGCATGGATATCGCTTGATGAAATTAGCATCCATCAGGCACTGCTCTTGGGACAAGATGGAAATTCACCTTATGGCTTTTACAATGGTCAGAGATGTCATATGTGTTTGAGATCTGATTCATTGTATAAAGTGATGGAGCGGTTAGCTAATCCTGGGGTTAGAAGACTTGTGGTTGTGGAGCCAGGCAGCAAGCGCGTGGAGGGGATTATTTCGTTGAGGGATGTGTTCAGATTCTTGTTAGGATAG 1449 0.4341 MFASVADTGHESSGVSGSIMIPKRFVWPYGGRKVFLSGSFTRWSEHIPMSPMEGCPTAFQVICSLMPGYHQYKFNVDGEWQHDEQQPFVTGSYGVVNTIFLTREPDALPSIFIPEMPGRSHMEVDNDVFRLVEANLRVSESDLEVSCHRIAVFLSTYTAYELLPDSGKVVAFDINLPVKQAFHVLYEQGIPMAPLWDFSKSQFVGVLSAMDFILILKELGNHGSNLTEEQLETHTIAAWKEVKVQQSRTLDSGRSYPQHFVHAGPHECLKDVALKILQNNVASVPIIQSGSQDGSFPQLLHLASLSEILKCICRHFKHSSSSLPIFHLPIGSLPMGTWVPKVGESNTQPLAMLRSNASLGAALSLLIQAEVSSIPIVDGNDSLLDIYSRSDITALAKDKAYAWISLDEISIHQALLLGQDGNSPYGFYNGQRCHMCLRSDSLYKVMERLANPGVRRLVVVEPGSKRVEGIISLRDVFRFLLG 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5095g00050 482 Gene3D - 140 322 IPR046342 -
Pral5095g00050 482 ProSiteProfiles CBS domain profile. 428 482 IPR000644 -
Pral5095g00050 482 FunFam Sucrose nonfermenting 4-like protein 18 103 - -
Pral5095g00050 482 Pfam CBS domain 347 393 IPR000644 -
Pral5095g00050 482 Pfam CBS domain 434 481 IPR000644 -
Pral5095g00050 482 SUPERFAMILY CBS-domain pair 148 318 IPR046342 -
Pral5095g00050 482 Gene3D - 328 482 IPR046342 -
Pral5095g00050 482 SUPERFAMILY CBS-domain pair 341 481 IPR046342 -
Pral5095g00050 482 Pfam Glycogen recognition site of AMP-activated protein kinase 21 103 IPR032640 -
Pral5095g00050 482 CDD E_set_AMPKbeta_like_N 24 100 - -
Pral5095g00050 482 Gene3D Immunoglobulins 18 101 IPR013783 -
Pral5095g00050 482 ProSiteProfiles CBS domain profile. 346 408 IPR000644 -
Pral5095g00050 482 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 142 480 - -
Pral5095g00050 482 SMART cbs_1 168 217 IPR000644 -
Pral5095g00050 482 SMART cbs_1 432 481 IPR000644 -
Pral5095g00050 482 SMART cbs_1 349 397 IPR000644 -
Pral5095g00050 482 SUPERFAMILY E set domains 21 101 IPR014756 -
Pral5095g00050 482 ProSiteProfiles CBS domain profile. 162 224 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5095g00050 Pral-Chr5095 189262 196223 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5095g00050 30 89 Protein tyrosine phosphatase (PTP) family AT3G52180 36.066 5.22e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5095g00050 - - qsa:O6P43_011107 775.393