LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral5095g00044	ATGCAAATGCAAGACATTTTCGGGTCAGTTCGCCGATCGCTTGTGTTTCGTACTACGCCGGAGAACGAAGAAGCCTCACTTGGAGGAACCCTAGTTGATAAGATCAATTCGTGCATCCGCAAGTCCAGAGTCTTCTCTAAACCTTTTCCGGCATCTTCGCCATTGCCACCGATCACAAAGGAATCTTCGCTTATGATCCGATGGCGCAAAGGCGAGTTGATCGGATGTGGTGCCTTTGGCCGAGTTTACATGGGCATGAATCTTGACTCTGGAGAGCTTCTGGCAGTAAAACAAGTTCTGATCGCGGCTAGTAGTGCTTCGAAGGAGAAGGCACAGACTCACATAAAGGAGCTTGAGGAAGAAGTTAAGCTTCTTAAAGATCTTTCCCATCCCAATATTGTTAGATATTTGGGTACAGTTAGGGAGGAGGACACATTAAATATTCTTCTGGAATTTGTACCAGGTGGATCCATATCGTCACTTCTGGGGAAGTTTGGAGCTTTCCCTGAGGCTGTTATTAGAACTTTCACGAAGCAATTACTGCTGGGACTTGAGTACTTGCACAAAAATGGAATCATGCACAGGGACATTAAGGGGGCAAATATCCTCGTTGATAATAAAGGGTGCATAAAACTTGCAGATTTTGGGGCGTCCAAACAGGTCGTTGAGCTGGCTACCATTACCGGTACCAAGTCTATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTTATTCTCCAGACTGGGCATAGCTTCTCTGCTGATATATGGAGCGTTGGGTGTACTGTGATTGAAATGGCCACTGGAAAACCTCCTTGGAGCCAGCAGTACCAAGAGGTTGCTGCTCTCTTCCATATAGGGACAACAAAGTCTCATCCACCAATTCCGGATCATCTTTCTCTTGGAGCAAAAGATTTTCTATTAAAATGTTTGCAGAAGGAACCAGTCTTACGGCCATCAGCATCAGAACTGTTGCAGCATCCCTTTGTTACTGGCGAGCACATGGGTTCAATTCCTGCGTCATGTACAGCAATGCAGGGAAAATTTGAAGCTTCCTCAGCATCTTGCACCTCAAACATCGAAACTCCCTCAATTGTACATCCTGAGGAAGAAGAGAATAAAGAGTATTGGGGAATGGGCAATGATGACGACATGTGTGAGATTGATGACAAAGATGACTTCTCGGAGGGGGCTGTTAAACTTAGATCCTCGATGTCAGAAAATATTATGAGTTTCAACCCGATGTCTGATCCCTCTGATGATTGGAGTTGCGAATTCGATGTGAGTCCAGGACTGGATCGTTGTGGAGTTAGTATTACCACTGACGAAATGCATAAGCCTGCTGACAACCTGGAGGCTTCCCATGAGGAGCAGAAAGATTTTTCCTTTTCAGGCGAACCATCAGTGTCCGAGGAGGATGAACAACTTACTGAGTCAAAAATACAAGCTTTTTTGGATGAGAAGGCTCTAGGACTGAAAAAACTGCAAACACCTTTATATGAAGAGTTCTACAACAGTTTCAATACATCTTGTTCTCCCGATGCGGTTGAAAACTCAAATGACGAAACTACTCCGAAGTTCTTGAAATTACCTCCCAAAAGCAGGTCCCCGAATCGGGTAGCAATTGGCACCCCATCAAAAGCAGTCGACCATACCGAAAGTCCGGGAAGTACTGGCAGGTCCTCCCCGAATGTTGGGAATGCAACTGATCATAATTCACAGAACATACCATCACCCCCCCTCAATGAATGGAAAGGATTGCTAGTTGATTCCCAGCAGGAGCCTCCTAGCCCAAGTTTAAGCTTTTCCGAGAGACAGAAGAAGTGGAAAGAAGAACTTGACCAGGAGCTTGAGAGAAAGCGCGAAATGATGCGTCAAGCTGGTATAGGGGGGAAAACATCATCACCAAAGGATCGAGCCTTAAATCGGCAGAGAGAACGGACGAGATTTGCATCGCCCAGCACATAA	1968	0.4573	MQMQDIFGSVRRSLVFRTTPENEEASLGGTLVDKINSCIRKSRVFSKPFPASSPLPPITKESSLMIRWRKGELIGCGAFGRVYMGMNLDSGELLAVKQVLIAASSASKEKAQTHIKELEEEVKLLKDLSHPNIVRYLGTVREEDTLNILLEFVPGGSISSLLGKFGAFPEAVIRTFTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATITGTKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFHIGTTKSHPPIPDHLSLGAKDFLLKCLQKEPVLRPSASELLQHPFVTGEHMGSIPASCTAMQGKFEASSASCTSNIETPSIVHPEEEENKEYWGMGNDDDMCEIDDKDDFSEGAVKLRSSMSENIMSFNPMSDPSDDWSCEFDVSPGLDRCGVSITTDEMHKPADNLEASHEEQKDFSFSGEPSVSEEDEQLTESKIQAFLDEKALGLKKLQTPLYEEFYNSFNTSCSPDAVENSNDETTPKFLKLPPKSRSPNRVAIGTPSKAVDHTESPGSTGRSSPNVGNATDHNSQNIPSPPLNEWKGLLVDSQQEPPSPSLSFSERQKKWKEELDQELERKREMMRQAGIGGKTSSPKDRALNRQRERTRFASPST	655

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral5095g00044	655	FunFam	Mitogen-activated protein kinase kinase kinase 2	67	359	-	-
	Pral5095g00044	655	Coils	Coil	606	626	-	-
	Pral5095g00044	655	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	192	204	IPR008271	GO:0004672\|GO:0006468
	Pral5095g00044	655	SMART	serkin_6	68	330	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral5095g00044	655	MobiDBLite	consensus disorder prediction	510	525	-	-
	Pral5095g00044	655	SUPERFAMILY	Protein kinase-like (PK-like)	67	365	IPR011009	-
	Pral5095g00044	655	ProSitePatterns	Protein kinases ATP-binding region signature.	74	97	IPR017441	GO:0005524
	Pral5095g00044	655	ProSiteProfiles	Protein kinase domain profile.	68	330	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral5095g00044	655	Pfam	Protein kinase domain	69	330	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral5095g00044	655	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	60	336	-	-
	Pral5095g00044	655	MobiDBLite	consensus disorder prediction	510	655	-	-
	Pral5095g00044	655	CDD	STKc_MAPKKK	67	330	-	-
	Pral5095g00044	655	MobiDBLite	consensus disorder prediction	604	626	-	-
	Pral5095g00044	655	Gene3D	Transferase(Phosphotransferase) domain 1	67	365	-	-
	Pral5095g00044	655	MobiDBLite	consensus disorder prediction	550	580	-	-
	Pral5095g00044	655	FunFam	Serine/threonine-protein kinase STE11	64	158	-	-
	Pral5095g00044	655	Coils	Coil	101	128	-	-
	Pral5095g00044	655	MobiDBLite	consensus disorder prediction	451	478	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral5095g00044	Pral-Chr5095	136491	142080	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral5095g00044	3	653	MAP Kinase Kinase Kinase	AT1G54960	56.133	0.0	681

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Pral5095g00044		Pkinase	5.1e-71	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral5095g00044	K20606		-	gmx:100779001	997.653