Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5095g00002 ATGCCTCCCCTCCCCCTCCTCCTCCTTGTCCTCCTCCTCCCCCCTCCCCTCCCCCTCGCCAGAGCCCAGGTCGGTAACACCGGCCCTTCCGGACCTTACTACAGCTCCTACACCCCCTCCGTCGCCATCATCATCGTCATTTTAGTCGCCGCCCTCTTCCTCACCGGCATCTTCACCATCTATATCCGCCACTGCGGCCAATCATCCGACTCCGCTGCGCCCAACCTTGCCGCTCGCTCCAGACGCCAGGCTCGCGGTCTTGATGCCGCCGTCATCCGCTCTTTCCCAACTCTTGACTACTCCGCCGTTAAGATTCACAAGATTGGAAAAGGTGCCCTTGAATGCGCCGTCTGCTTGAACGAGTTTGAGGACTCCGAAACACTCCGTCTCATCCCCAAGTGCGACCACGTTTTCCATCCCGAATGCATCGACGAGTGGCTGGCCTCCCACACTACCTGCCCCGTCTGCAGGGCCGACCTCATCCCTAAACCGGGCGACTCCGTTCATGCAGTGCCCGTGCTTGAGTCGCACGCCAATATGGAAACCCAAAACGAAGCTGGGGAATCCCCGGGGGTTGACTGTGAGGCCGCCGAGCCTGACGTTATGCGAGTCAATCAGAAGCTGAACCGGAACGGCACGCGAGGTTCTCGGTCAAGTCAGACGGTATGGTGGGCGAGGTCTCACTCGACTGGGCACTCGCTGCTCCAGCCCGGGGAAAACAGCGACAGATACACTTTGAGGCTGCCGGCGGACGTGAGGAATCGGCTGCTAAATCAGAAATTTCATCGGGCGACAAGCTTGGTAATCTTGCCTGGGCAGAGCAGTTCAAGGAAGGGGTATCGAAACGGAGGTGAGAGTAGTAGCAGGGGGAGGTTTTCAAGGCGACTGGACCGCGGGCTTAAATCAGACCGATGGGTTTTCACGATGGCGCCGCCCTTCTTAGTGAGGGCGTCATCGGTCAGGTCTCCCAAGGTGGCTGGCAACGGTGCCGGCGTTGAAGAGACCTCCTCCGATCCCATCATGCCACCACCGGCGGTGGACTCGTCCCGGCCTCCGGTTTAG 1062 0.6008 MPPLPLLLLVLLLPPPLPLARAQVGNTGPSGPYYSSYTPSVAIIIVILVAALFLTGIFTIYIRHCGQSSDSAAPNLAARSRRQARGLDAAVIRSFPTLDYSAVKIHKIGKGALECAVCLNEFEDSETLRLIPKCDHVFHPECIDEWLASHTTCPVCRADLIPKPGDSVHAVPVLESHANMETQNEAGESPGVDCEAAEPDVMRVNQKLNRNGTRGSRSSQTVWWARSHSTGHSLLQPGENSDRYTLRLPADVRNRLLNQKFHRATSLVILPGQSSSRKGYRNGGESSSRGRFSRRLDRGLKSDRWVFTMAPPFLVRASSVRSPKVAGNGAGVEETSSDPIMPPPAVDSSRPPV 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5095g00002 353 CDD RING-H2_EL5-like 114 157 - -
Pral5095g00002 353 Pfam Ring finger domain 114 157 IPR001841 -
Pral5095g00002 353 SMART ring_2 115 156 IPR001841 -
Pral5095g00002 353 MobiDBLite consensus disorder prediction 272 287 - -
Pral5095g00002 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 162 IPR013083 -
Pral5095g00002 353 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Pral5095g00002 353 MobiDBLite consensus disorder prediction 318 353 - -
Pral5095g00002 353 MobiDBLite consensus disorder prediction 272 295 - -
Pral5095g00002 353 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 31 203 - -
Pral5095g00002 353 FunFam E3 ubiquitin-protein ligase ATL6 75 163 - -
Pral5095g00002 353 SUPERFAMILY RING/U-box 109 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5095g00002 Pral-Chr5095 27361 28790 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5095g00002 4 330 Rapid Response to Elicitors AT3G05200 42.388 9.59e-80 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5095g00002 K10664 - gmx:100810865 408.297