Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5095g00001 ATGTGTCTCCCTGAGGGAGAGAGAGATAGCCAGACCTCCATGGCCCTCGAAGCTGTTGTTTTCCCTCAAGACTACCCGTTTGGCTATGGCGGTTCCAAAGACTTCCATCCTCTCTGGCCCTTTCACGACGATTTCAACCTTCCCAAACAGGAAGACCAGCACGGCTTTCTGAATTTTCTCGACAGCCAAACAGAAAATTATGGCTTCGGCGACTGGACTCAAGTTTGCTCTTCTTCTCCTCCTTCATCAGTGTTACCCCACTCCAGTGAACTTCATCTCCCTAATCACGCCACCTCCGAAGCCAGCAACCACCCAGCACCCTCGTCTGAAGCCCTCCCCATGGATTCCTCCAATTCTCGTCCCAAGAGACGCAGAGCCAGAACCCGAAAGAACAAGGAGGAGATCGAGAACCAGAGAATGACGCACATTGCGGTGGAGCGCAATCGAAGAAAGCAGATGAACGAGTATCTCTCTGTCCTACGCTCTCTCATGCCCGACTCCTACGTCCAAAGGGGCGATCAAGCTTCCATAATAGGAGGGGCTATTAACTTTGTGAAGGAGCTGGAGCAGAGGCTGCAATTTCTGGGGGGTCAGAAAGAAACAGAGGCGAAATCTCAGAGCATGCCGTTCTCAGAGTTCTTCACGTTTCCTCAGTACACGACGAGCCCGAGCGGAAGCGGCGAGTGTTCGGCGACGGGGGAGAAAGTGGGGGAGGCATCGCCGGAGGCCAGCATAGCAGATATAGAAGTGACAATGGTGGAGAGCCACGCGAATGTGAAAATAAGGTCGAGGAAGAGGCCGAAGCAGCTGTTGAAGATGGTGGCGGCGTTGTACAGCATGCGCCTCACGATCTTGCATCTCAATGTGACGACCACCGGCGATATTGTGCTCTACAGCATCAGCGTCAAGTTAGAAGAAGAGTGCAAGCTGGGATCAGTGGAGGAGATAGCAGGAGCAGTGCACAAAACGATGGAGAGGATCGAACGAGAGAGTGCGCATGCAGAATCAGGATCCGAACATGAATAA 1026 0.5292 MCLPEGERDSQTSMALEAVVFPQDYPFGYGGSKDFHPLWPFHDDFNLPKQEDQHGFLNFLDSQTENYGFGDWTQVCSSSPPSSVLPHSSELHLPNHATSEASNHPAPSSEALPMDSSNSRPKRRRARTRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQRLQFLGGQKETEAKSQSMPFSEFFTFPQYTTSPSGSGECSATGEKVGEASPEASIADIEVTMVESHANVKIRSRKRPKQLLKMVAALYSMRLTILHLNVTTTGDIVLYSISVKLEEECKLGSVEEIAGAVHKTMERIERESAHAESGSEHE 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5095g00001 341 CDD bHLH_AtFAMA_like 140 207 - -
Pral5095g00001 341 Gene3D - 124 205 IPR036638 GO:0046983
Pral5095g00001 341 Pfam Helix-loop-helix DNA-binding domain 138 189 IPR011598 GO:0046983
Pral5095g00001 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 137 210 IPR036638 GO:0046983
Pral5095g00001 341 SMART finulus 143 194 IPR011598 GO:0046983
Pral5095g00001 341 MobiDBLite consensus disorder prediction 78 116 - -
Pral5095g00001 341 PANTHER MAX DIMERIZATION, MAD 76 331 - -
Pral5095g00001 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 188 IPR011598 GO:0046983
Pral5095g00001 341 MobiDBLite consensus disorder prediction 78 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5095g00001 Pral-Chr5095 13104 14641 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5095g00001 14 304 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 47.975 4.92e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral5095g00001 HLH 4.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5095g00001 - - pvu:PHAVU_007G181900g 360.918