Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5091g00027 ATGGCGACTCCATCAGGCTCTGTCGCTTCTTCTGTGTCTTCCCAGTTCACCAATTCCAACGGTTCATATTTCCCCGTGCCCTTTCACCTCCAGCAATCCCTAGCGGCGCAGTATGGGACATCATACGTGGCAGCATCGCCAGCAGTGCAAATTCCTCCTTCCCTTTATCCGTCTCCGGCACCGGTCGCTGGGTTGTATCCTCTGCCGCAGTATCAGCAGGCGCAGCAACTGTTTCAAAGGGATGCACAAACAATTACACCTGAGGCTCTTGAAAGTGTCAAGGCGGCCATTGCAAATAGCGAGATTGAGCATAAGGCGGAGACCAAAAAGAAAGCAGTTCCTCGCAAAGCTGCTGGCCAAACATGGGAGGATCCCACTCTTGCAGATTGGCCAGAAAATGATTATCGGCTCTTTTGTGGTGATCTTGGTAATGAGGTGAATGATGATGTTCTTTCAAAAACATTTTCTCGATTTCCTTCCTTTAACATGGCACGAGTTGTCAGAGACAAGCGGACTGGAAAAACAAAGGGTTATGGATTTGTAAGCTTTGCCAATCCTGCTGACCTTGCTGCTGCTCTGAAAGAAATGAATGGTAAATATGTTGGAAATCGGCCAATTAAGCTTCGCAGGAGCAAGTGGCAGGAGCGGACAGATTATGAGGCCCTGGAAAAACAGAAGAACCAAGCTCAGAAGAAATCGAAATTGCCGAGGAAGAGTATTCTGCACAAGTAA 732 0.4809 MATPSGSVASSVSSQFTNSNGSYFPVPFHLQQSLAAQYGTSYVAASPAVQIPPSLYPSPAPVAGLYPLPQYQQAQQLFQRDAQTITPEALESVKAAIANSEIEHKAETKKKAVPRKAAGQTWEDPTLADWPENDYRLFCGDLGNEVNDDVLSKTFSRFPSFNMARVVRDKRTGKTKGYGFVSFANPADLAAALKEMNGKYVGNRPIKLRRSKWQERTDYEALEKQKNQAQKKSKLPRKSILHK 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5091g00027 243 SUPERFAMILY RNA-binding domain, RBD 119 214 IPR035979 GO:0003676
Pral5091g00027 243 MobiDBLite consensus disorder prediction 221 243 - -
Pral5091g00027 243 Coils Coil 212 232 - -
Pral5091g00027 243 SMART rrm1_1 136 209 IPR000504 GO:0003723
Pral5091g00027 243 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 135 213 IPR000504 GO:0003723
Pral5091g00027 243 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 63 225 - -
Pral5091g00027 243 FunFam RNA-binding protein 42 70 220 - -
Pral5091g00027 243 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 137 207 IPR000504 GO:0003723
Pral5091g00027 243 CDD RRM_RBM42 129 211 IPR034215 -
Pral5091g00027 243 Gene3D - 70 210 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5091g00027 Pral-Chr5091 149750 154379 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5091g00027 137 235 Eukaryotic Initiation Factors Gene Family AT1G71770 29.293 2.62e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5091g00027 K25079 - qsa:O6P43_011258 381.719