Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5091g00015 ATGTTATCTCAGAAAGCTGATCTCAGAGACAGTTTATGGCTTCTGTGTGGTTCTACTACCCATTCAGCTGGCATTTCTACGGCAACAAATGATTATTCCGCTAAAGGATATACTCCAAGTCAAATATATGTTCCATATTCCGTTTTCAAAGGCAAAGCTGCACTCTCTCTGAGTCCCCGACTTCCAACTTTCACTAAGCTGGATTCTGGGGCCGTTGTAATTGATCGCTGTGGTTCAATGATGATGACTTTTGTACCCGCTCTTGGTGAGCGCAAATATGATTGGGAGAAGAAACAGAGATTTGCTCTCTCAGCGACGGAGGTTGGTTCTTTGATAAGCATGGGCCCCACAGATTCCTGTGAATTCTTTCATGACCCTGCAATGTTATCAAGTAATGCTGGTCAGGTCAGGAAGAGCTTATCAATTAAGCCACACGCAGACAGCTCTTGCTACTTTATGTCTTTGTCTGTTGTCAACAACATTTTAAAAACCAAAGAATACTTGTCTGTTCCCGTCACAACTGCTGAGTTTGCTGTGATGAAGACTGCTTGCAGCTTTGCATTGCCGCACATTATGGGTTGGGATCGTCTGACTCATGATCAGTCCAGAGGCAAGCATGATCATCAATCAAAGGTGGACCCACAAGTTCTAGACTTGGAGTGGGCAAAATGA 672 0.4405 MLSQKADLRDSLWLLCGSTTHSAGISTATNDYSAKGYTPSQIYVPYSVFKGKAALSLSPRLPTFTKLDSGAVVIDRCGSMMMTFVPALGERKYDWEKKQRFALSATEVGSLISMGPTDSCEFFHDPAMLSSNAGQVRKSLSIKPHADSSCYFMSLSVVNNILKTKEYLSVPVTTAEFAVMKTACSFALPHIMGWDRLTHDQSRGKHDHQSKVDPQVLDLEWAK 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5091g00015 223 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 19 223 IPR013742 GO:0003697|GO:0006355|GO:0006952
Pral5091g00015 223 Pfam Whirly transcription factor 48 182 IPR013742 GO:0003697|GO:0006355|GO:0006952
Pral5091g00015 223 SUPERFAMILY ssDNA-binding transcriptional regulator domain 41 210 IPR009044 GO:0003677|GO:0006355
Pral5091g00015 223 Gene3D Transcriptional Coactivator Pc4; Chain A 32 209 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5091g00015 Pral-Chr5091 84614 88546 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5091g00015 41 223 Whirly Transcription Factor Family AT1G71260 68.984 3.74e-90 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Pral5091g00015 Whirly 2.2e-56 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5091g00015 K26561 - qsa:O6P43_011277 311.227