Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5089g00026 ATGGTTTCCTTATTAAGCTTTTCATGGTTTCCTCCGTCCATACAACATGGTGTCTCTCGATCGAATAAATTTGTGGCTGCAGATGCGAGGGCGATAAATTCATTCTATGCTGCCCAAAGCAACGAGCATAGGAAGGCTGCTTGTGCTTGTGCTTGTGCGGCTTCTCCACGAAACTTGATGAGCGATGAGTCATCGGCGATTAAATTTAATGGTTCTTCTGAATCAGAACACTTAAACACAATAGGGGATCTTCAGGACGATTCTGATGTTCTTATTGAGTGCAAAGAAGTCTACAAGTCTTTTGGGGAAAAGAAAATCCTAAATGGTGTGAGCTTCAAGATCAGACACGGGGAAGCTGTTGGAATAATCGGTCCCTCTGGGACTGGCAAATCTACTGTCTTGAAGATTATCGCAGGATTGCTTGCTCCGGACAAGGGAGAGGTTTACATTAGAGGTAAAAAGAGGGCTGGTTTGATAAGCGATGAAGAGATATCTGGTCTTCGGATTGGACTAGTGTTCCAAAGTGCAGCTCTTTTTGATTCTTTGACTGTACGTGAAAATGTTGGTTTTCTCTTGTACGAACACTCAAGCATGTCCGAGGATCAAATTTCAGAGCTTGTCAAGGAAAGCTTGGCGGCTGTTGGATTAAAGGGTGTTGAGGATCGGCTGCCTTCGGAGTTGTCTGGTGGGATGAAAAAACGGGTTGCCTTGGCTCGGTCCATTATTTATGACACTACAAATGATTCAATAGAACCAGAGGTGCTTTTGTATGATGAACCAACTGCGGGACTGGATCCCATAGCTTCTACAGTAGTTGAGGATCTGATCCGCTCTGTTCACATAAAAGGACGTGACGCTCTTGGAAAGCCTGGGAAGATTGCATCTTATGTAGTTGTCACCCACCAACATAGTACCATTAAAAGAGCTATTGACAGGTTATTATTTTTACACAAGGGTAAGATTGTCTGGGAAGGAATGACGCATGACTTTACCACATCACCAAATCCAATAGTCCAACAGTTTGCGTCTGGCAGCCTGGACGGTCCTATCAAATATTAG 1059 0.4391 MVSLLSFSWFPPSIQHGVSRSNKFVAADARAINSFYAAQSNEHRKAACACACAASPRNLMSDESSAIKFNGSSESEHLNTIGDLQDDSDVLIECKEVYKSFGEKKILNGVSFKIRHGEAVGIIGPSGTGKSTVLKIIAGLLAPDKGEVYIRGKKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYEHSSMSEDQISELVKESLAAVGLKGVEDRLPSELSGGMKKRVALARSIIYDTTNDSIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHIKGRDALGKPGKIASYVVVTHQHSTIKRAIDRLLFLHKGKIVWEGMTHDFTTSPNPIVQQFASGSLDGPIKY 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5089g00026 352 Pfam ABC transporter 107 262 IPR003439 GO:0005524
Pral5089g00026 352 Gene3D - 80 345 IPR027417 -
Pral5089g00026 352 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 334 IPR027417 -
Pral5089g00026 352 ProSitePatterns ABC transporters family signature. 227 241 IPR017871 GO:0005524|GO:0016887
Pral5089g00026 352 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 92 343 IPR003439 GO:0005524
Pral5089g00026 352 SMART AAA_5 116 320 IPR003593 GO:0016887
Pral5089g00026 352 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 12 352 - -
Pral5089g00026 352 CDD ABC_Org_Solvent_Resistant 92 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5089g00026 Pral-Chr5089 110362 115281 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5089g00026 92 337 Calmodulin-binding Proteins AT2G36910 29.057 2.73e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5089g00026 - - qsa:O6P43_011318 550.051