Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5088g00088 ATGAGCGCTGAGGCTAGCATTGATCTCTCTGATTCTAGAGATAGAGAGTGTAGGATTTGTCGCTTGGGTTTGGAGAGTGACAGCCATGTATATGGGGTTCCAATTGAATTGGGTTGTTCTTGCAAGGATGATCTTGCTGTGGCTCACAAACTCTGTGCTGAAAACTGGTTCAGGAGTAGAGGAAAGAGGACCTGCGAAATCTGTCATTCTGTGGCACGGAATGTTTTTGCAACAAATGAGGAGACAGCCGAGAATTTAAGGGACAGCTACAGCGTCATCACAGTATCCACAACTCAGCCACAGAATCCCCCAAGCTTTTGGCTGGATCGTCATTTCCTGGAATTTTGTATATTTATCATATTTTTCATCACATTTGTCATCGCATGTGTGTTCGCAGGCTTATTTGGCTAG 411 0.4453 MSAEASIDLSDSRDRECRICRLGLESDSHVYGVPIELGCSCKDDLAVAHKLCAENWFRSRGKRTCEICHSVARNVFATNEETAENLRDSYSVITVSTTQPQNPPSFWLDRHFLEFCIFIIFFITFVIACVFAGLFG 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5088g00088 136 ProSiteProfiles Zinc finger RING-CH-type profile. 9 75 IPR011016 GO:0008270
Pral5088g00088 136 Pfam RING-variant domain 17 68 IPR011016 GO:0008270
Pral5088g00088 136 PANTHER ZINC FINGER, RING-CH-TYPE 8 127 - -
Pral5088g00088 136 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 80 IPR013083 -
Pral5088g00088 136 SMART ringv_2 16 69 IPR011016 GO:0008270
Pral5088g00088 136 SUPERFAMILY RING/U-box 11 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5088g00088 Pral-Chr5088 813740 814998 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5088g00088 4 131 C3H Transcription Factor Family AT5G05830 42.857 1.28e-28 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5088g00088 - - gmx:100808666 132.109