Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5088g00087 ATGTCATCAATCATACAGATTTCCGTTGTAGATTTGGAGCAGAGAAGCCATCGCAGTGACATGAGTGCCGAGGCTAGCATTTGCTTCTCTGATGCTGAAGAGGGTTCTTGCTATTCCCACTTCTATTCAACAAATGGTGGCTCATACGATGACTATAGCTTTGCTTGTGTTTCTGATCCTGAGGTTATTGAGGGTGTTCCTGAGTCAGGAAGAGCTTCTTCTGTCACTGAATGTTCAGTGGAGGTGGAAATTGAAAGTGGGGTTCCTGAAGTTAAGTTGCATTTGGATATAGTGGAGAGAGAGTGTAGGATTTGTCACATGGGTTTGGAAAGTGATAGCCATGAATCTGGGGTTCCAATTGAATTGGGTTGCTCCTGCAAGGATGATCTTGCTGCTGCTCATAAACTCTGTGCTGAAACTTGGTTCAAGATTAAAGGGAACAGGACCTGTGAAATCTGTCATTCTGTGGCACGGAATGTTTTTACAGCAAATGAGGAGACAGCTGAGAATTTAAGTGACAGCAACAATGCTATCACATTATCCTCACTTCCAATGCCGGCTTCCCCAGAAACTCGAAGATTTTGGCAGGGCCGGCGCTTCCTGAATTTTATGCTTATTTGTATGGTTATCGCATTTGTCATATCATGGGCTTTTCACTTCCATTTTCATTCACCTTAG 678 0.4351 MSSIIQISVVDLEQRSHRSDMSAEASICFSDAEEGSCYSHFYSTNGGSYDDYSFACVSDPEVIEGVPESGRASSVTECSVEVEIESGVPEVKLHLDIVERECRICHMGLESDSHESGVPIELGCSCKDDLAAAHKLCAETWFKIKGNRTCEICHSVARNVFTANEETAENLSDSNNAITLSSLPMPASPETRRFWQGRRFLNFMLICMVIAFVISWAFHFHFHSP 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5088g00087 225 PANTHER ZINC FINGER, RING-CH-TYPE 15 222 - -
Pral5088g00087 225 CDD RING_CH-C4HC3_MARCH 102 154 - -
Pral5088g00087 225 Pfam RING-variant domain 102 153 IPR011016 GO:0008270
Pral5088g00087 225 SUPERFAMILY RING/U-box 98 157 - -
Pral5088g00087 225 ProSiteProfiles Zinc finger RING-CH-type profile. 94 160 IPR011016 GO:0008270
Pral5088g00087 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 164 IPR013083 -
Pral5088g00087 225 SMART ringv_2 101 154 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5088g00087 Pral-Chr5088 807059 810456 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5088g00087 64 224 C3H Transcription Factor Family AT5G05830 55.828 4.85e-58 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5088g00087 - - gmx:100808666 332.798