Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5088g00083 ATGGAAGTGGATGAAAAACCCATCGTTGAGCTCGACAAACCACCCGCCGGAGACGTTGGCAGCGGCGGAGACGGCGGTAGTGGTGACGAGGGTTTAATAGCGTTAGGTGATGGAGGTGGGAGTAGCTCCCAGACCGCTAAAGACAGAGTGAAGGGTCCTTGGTCTCCAGAGGAGGACGCGATACTGGGTCGACTTGTTAGCAAGTTCGGGGCCCGGAATTGGAGCCTAATTGCTCGCGGGATCGCTGGAAGATCCGGCAAGTCTTGTCGCCTCCGGTGGTGCAACCAACTCGACCCAGCTGTGAAGCGCAAGCCCTTTACTGATGAGGAGGACCGGATCATAGTTGCAGCACATGCAATCCATGGGAATAAATGGGCAGCCATAGCCAGACTTCTACCAGGAAGAACAGATAATGCCATTAAGAATCATTGGAATTCTACTTTGAGGCGTCGGGGAATAGAACTTGATAAAGTTAAATTAGAACCTTGCAACACGACAGAAGATGTTAGCTTGGAGAAAGCAAAAGCATCATCTGAAGAAACTCAGTCATGTGGGGATGTTAATTCCTTGAGATCTTCAGAAGGAAGAGATGTCAGTTCTGTGGAGAATATGGAGGATAAATATGAAAACAAAGCACAGACAGAGAGTCAAATGAAGCATGAAGTCAAGGATCCGCCCACTCTTTTCCGACCTCTAGCACGTATTAGTGCTTTTAGTGTATATAACTCATTGGATGGTTCACAACCTGCTATGTCAACCCCTAGGCCAGTTCCAATGCAAGGGCCTCTTTTTCAAGCATCAAAGCCGGGGATTGAAATTTGTAAAATGCTTGATGGAATTTATGGCTGTGACCTATCTGTTCCTAACCACTGTGGCCATGGTTGTTGCACTGATCTAGGTGGCGAAAATGCCAAAAGCTCCTTGTTGGGGCCAGAATTTATTGAATATTCAGAGCCCCCGGCATTCCCAAGTTTTGAGTTGGCAGCCATAGCTACAGACATCAGCAACCTTGCTTGGCTGAAAAGTGGATTGGAGAATAGTAGTGTCAAAATGATGGGTGACTCGGCCGGCAGGGTTACATCTCATGGATCCCAAGTGAATATTGGCCATTAA 1113 0.478 MEVDEKPIVELDKPPAGDVGSGGDGGSGDEGLIALGDGGGSSSQTAKDRVKGPWSPEEDAILGRLVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDRIIVAAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLRRRGIELDKVKLEPCNTTEDVSLEKAKASSEETQSCGDVNSLRSSEGRDVSSVENMEDKYENKAQTESQMKHEVKDPPTLFRPLARISAFSVYNSLDGSQPAMSTPRPVPMQGPLFQASKPGIEICKMLDGIYGCDLSVPNHCGHGCCTDLGGENAKSSLLGPEFIEYSEPPAFPSFELAAIATDISNLAWLKSGLENSSVKMMGDSAGRVTSHGSQVNIGH 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5088g00083 370 FunFam MYB transcription factor 51 102 - -
Pral5088g00083 370 MobiDBLite consensus disorder prediction 1 54 - -
Pral5088g00083 370 Pfam Myb-like DNA-binding domain 54 111 - -
Pral5088g00083 370 MobiDBLite consensus disorder prediction 171 205 - -
Pral5088g00083 370 ProSiteProfiles Myb-like domain profile. 46 97 IPR001005 -
Pral5088g00083 370 SUPERFAMILY Homeodomain-like 48 144 IPR009057 -
Pral5088g00083 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 152 IPR017930 -
Pral5088g00083 370 ProSiteProfiles Myb-like domain profile. 98 148 IPR001005 -
Pral5088g00083 370 PANTHER MYB PROTEIN-RELATED 51 203 - -
Pral5088g00083 370 Gene3D - 105 151 - -
Pral5088g00083 370 CDD SANT 53 95 IPR001005 -
Pral5088g00083 370 MobiDBLite consensus disorder prediction 176 197 - -
Pral5088g00083 370 SMART sant 102 150 IPR001005 -
Pral5088g00083 370 SMART sant 50 99 IPR001005 -
Pral5088g00083 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 101 IPR017930 -
Pral5088g00083 370 FunFam Transcription factor MYB44 105 151 - -
Pral5088g00083 370 CDD SANT 105 148 IPR001005 -
Pral5088g00083 370 Coils Coil 201 221 - -
Pral5088g00083 370 Gene3D - 50 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5088g00083 Pral-Chr5088 785105 788308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5088g00083 40 370 MYB Transcription Factor Family AT3G09230 49.853 2.28e-105 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral5088g00083 Myb_DNA-bind_6 3.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5088g00083 K09422 - gmx:100811740 531.176