Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5088g00065 ATGGCAGAGGAAGAGAAATTCCCTGTTTTTATGGATGTTGAAATATGTTCGCCCCCCCATGAAAGGATGGTTTTTGAGCTACTCTATGACAGTGCTCCCTTCACTGCAGAAAATTTCCGTGCTCTATGTACAGGAGAAAAGGGAACTAGTCCAAAAACGGGAAAGATACTGCAGTACAAACATTGTTACTTTCATCGTCTCAAGAAAGGCAGCTCCTATGTGAAGGGAGGTGGTTTTTGCTGGGAAACTGGGAAAGGGGGAGAAAGCATATATGGTCCATGCTTCCCAGTTGAGTCAAATGAGCTTAAGCATGACCAAGAAGGGCTCCTATCCATGTGCCGACGTGATCAAAAAGCTTCTGGTTCTCATTTTATTGTCACACTGAAAGCTGATCCAAGGCTTGACAGTTCGCATGTGGTATTTGGGAAGCTTGTAGAAGGACTTGATACTCTGAGAACAATTCAAGAGTTGATTTACTATACGCCAATTAAAATCTGCCGTTCTGGTGTATTATATCATGCCAGAGACCGACCTGTTGATGTGAAGCCTTGTCTATCTAGTGCGCTCTCTTTTCAGGGGAGAGCACTAGTTGAACTAAACAGGGCAAATTATCGAAGGCCATCTTCCTCAAAGCCAAAGGAGGTTTATAAACCCATCCTCCCCGAAAAAAGGTTAACTGATTTCTCTTTCAAGCTGATGATCTTTTTTGTTTCCACCATTTGGCAAGTGAAGAAGGGCCTTCCACAAAGGCAAAGCTTCGCAAAACCTTCTTCCCCAGACCAACGTAGTATTGCTGATTTCTCTTTCAATCTGGCGATGTCTTTCTGGTCCCACCATTTTGATCTAGATGTTATTTTGGTTCCACCAGTTACTTATTCGTACAGTTTCGAAGTAAATGAATATCCGTTTTTGCGCTAA 918 0.4281 MAEEEKFPVFMDVEICSPPHERMVFELLYDSAPFTAENFRALCTGEKGTSPKTGKILQYKHCYFHRLKKGSSYVKGGGFCWETGKGGESIYGPCFPVESNELKHDQEGLLSMCRRDQKASGSHFIVTLKADPRLDSSHVVFGKLVEGLDTLRTIQELIYYTPIKICRSGVLYHARDRPVDVKPCLSSALSFQGRALVELNRANYRRPSSSKPKEVYKPILPEKRLTDFSFKLMIFFVSTIWQVKKGLPQRQSFAKPSSPDQRSIADFSFNLAMSFWSHHFDLDVILVPPVTYSYSFEVNEYPFLR 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5088g00065 305 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 108 123 IPR002130 GO:0000413|GO:0003755
Pral5088g00065 305 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
Pral5088g00065 305 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 123 135 IPR002130 GO:0000413|GO:0003755
Pral5088g00065 305 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 76 IPR002130 GO:0000413|GO:0003755
Pral5088g00065 305 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 136 151 IPR002130 GO:0000413|GO:0003755
Pral5088g00065 305 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 11 157 IPR002130 GO:0000413|GO:0003755
Pral5088g00065 305 Gene3D - 1 171 IPR029000 -
Pral5088g00065 305 SUPERFAMILY Cyclophilin-like 9 174 IPR029000 -
Pral5088g00065 305 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 157 IPR002130 GO:0000413|GO:0003755
Pral5088g00065 305 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 9 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5088g00065 Pral-Chr5088 619959 623905 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5088g00065 20 157 U-box Gene Family AT5G67530 36.691 1.57e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5088g00065 K09566 - qsa:O6P43_015666 178.718