Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5088g00052 ATGCTTCAGATTCGGCTTAGTAAGTTACCGGCCTCGGAAGGTTCAGCAGGGGCGAGGTCTGCACCTGTCGAGACTGCAATTGCATGCCCCGACCATCTAGTCCTGGCTGATCTACCTGTTGCAAAGGGCATCGGTGCAGCCACTGCCACTTCACTTATGAAGAGTTTAGGACGGAGGTCCCGCCGCCAGCTCGGCAATAGAGTTCATTTCTGTGTTCGTTGTGATTTTCCCATAGCTATCTATGGACGATTGAGCCCTTGCGAGCATGCCTTCTGCCTTGATTGTGCTAGAAGTGACCCAATGTGCTGCCTGTGTGATGAACGAATCCAGAAGATTCAAACCATCAAAATGATGGAGGGAATCTTTGTTTGCGCTGCTCCCCATTGTCTAAAGTCTTTCTTGAAGAAGACTGAATTTGAATCTCACATCCAAGAAAACCACTCTGATCTGCTTCGGCCTAATGCAGAGAGAGAGGATGGAAATGAGTCAGAGGCACAGAGTGTTAGGCAATCTACAGCATCAGACTCCACTGCTCGAGGTCCCCATAGGCCCGTTTTCTCTCCTGGTTCAAAGTCTCAGCTTCAGGATTGGGATGATAAAAGCCGTCAACAACCAACGAGAGAGCAGCCCCCTTCAAGGTCAATTCAACAGCCAAAGCCACCATTTTTGGGTCAAGCACCTAATCCTTCTTTGGATCCTCAGTCAGGCAACACTGGAGCTATTCAACAGGACTTCCATTCACAGAGTTTTGACATGAAGCAGTCCCAACGTGAACCCTGCCATCTCGTTGAGAGACAGCAAGGAGTTTCTTCAGAGACCCCAATTCGTGATTATCCACCCATGCATTCTATCAAGCCAACCGATGTTGCCATGCAAGTTAATCCCAATGCATTTCCGAAACCTCCTATAGCATTTAGTTACCCCCCTTACCCACAAGAGGTAGCTCAGCCTTTTTATGCTACATCCTATGACATGCCTAGGCAGAACTCGTCTTCTGAAATAGGTTTCGATCAGGGTTCACTATTTGGATACCCACGAGTTCCTGTAAGTGGCCCAAATTTTCCAGCAAATTATCCTCAGGCCTGGAATGCAGGAATGACCGGTGTACCTTTTGATCAAGCTCAGGGTGGTATGATTACTGATCCAAGAGATGCTAAAGGGATGTAG 1167 0.4807 MLQIRLSKLPASEGSAGARSAPVETAIACPDHLVLADLPVAKGIGAATATSLMKSLGRRSRRQLGNRVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSDPMCCLCDERIQKIQTIKMMEGIFVCAAPHCLKSFLKKTEFESHIQENHSDLLRPNAEREDGNESEAQSVRQSTASDSTARGPHRPVFSPGSKSQLQDWDDKSRQQPTREQPPSRSIQQPKPPFLGQAPNPSLDPQSGNTGAIQQDFHSQSFDMKQSQREPCHLVERQQGVSSETPIRDYPPMHSIKPTDVAMQVNPNAFPKPPIAFSYPPYPQEVAQPFYATSYDMPRQNSSSEIGFDQGSLFGYPRVPVSGPNFPANYPQAWNAGMTGVPFDQAQGGMITDPRDAKGM 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5088g00052 388 ProSiteProfiles Zinc finger C2H2 type domain profile. 122 148 IPR013087 -
Pral5088g00052 388 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 383 IPR040383 GO:0016567|GO:0061630
Pral5088g00052 388 MobiDBLite consensus disorder prediction 145 164 - -
Pral5088g00052 388 ProSitePatterns Zinc finger C2H2 type domain signature. 124 147 IPR013087 -
Pral5088g00052 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 122 IPR013083 -
Pral5088g00052 388 CDD RING-HC_HAKAI-like 69 118 IPR040380 -
Pral5088g00052 388 ProSitePatterns Zinc finger RING-type signature. 87 96 IPR017907 -
Pral5088g00052 388 MobiDBLite consensus disorder prediction 145 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5088g00052 Pral-Chr5088 527860 531035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5088g00052 1 366 C2H2 Transcription Factor Family AT5G01160 47.733 4.55e-98 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5088g00052 K15685 - gmx:100803063 565.074