Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5088g00011 ATGTTTTACCTCATCTGGCGGGGCAAGAGAATTCCAATTCGAGAGAGATACCAAGATCAAGTGAAAGCTCTAATTTTTTTTGGGATATGTTTGATCTCCGTGCTGCTTGACAAACTCATGCCTGGCAAATCAGATGCATGGAGCATTATCTCCTATGCTTCATTTGCCTTGATGTCGCTGTCCTCGTCAAGGAAGTCTGAGCTTGGATTCGAAACTGGGTTCTTCAGTTTTTTCCTATCATTGTTTTTCGAACAACTATGCAAAACCAACTTGAAACTCTCACCGATTGCAATAGTTTTCTGCTTGCTGGTCCTGATTCTTCGCCACTACTCAGCATCCGGAATCTCAGCATCCAGAATACAGTCTGGCACTCCAAATGGCTATCATCACGTTGAAGTTTTTCCTCCAAGTCAAGTTGTAACAGACAGTAGTGAGAGCCAATACTCCCCAGGGATGGGAGAAGTTTCAGGGCAAAGCCTGTTATCTGCCCATAATCAGCAAAATAACCAAGACGAGCATTCTGTATGCTTCATATGCTTGGCCAAATACGCAGAGAAAGAACTAGTGAGAATTTTGCCCTGCTCCCATATGTTTCACCTGGAATGTGTGGACAAATGGCTCAGAATTGCATCCTCCTGTCCTCTCTGCAAATGGGAGATAGGGAGGTAG 669 0.4425 MFYLIWRGKRIPIRERYQDQVKALIFFGICLISVLLDKLMPGKSDAWSIISYASFALMSLSSSRKSELGFETGFFSFFLSLFFEQLCKTNLKLSPIAIVFCLLVLILRHYSASGISASRIQSGTPNGYHHVEVFPPSQVVTDSSESQYSPGMGEVSGQSLLSAHNQQNNQDEHSVCFICLAKYAEKELVRILPCSHMFHLECVDKWLRIASSCPLCKWEIGR 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5088g00011 222 SMART ringv_2 175 217 IPR011016 GO:0008270
Pral5088g00011 222 Pfam Ring finger domain 176 217 IPR001841 -
Pral5088g00011 222 SUPERFAMILY RING/U-box 165 220 - -
Pral5088g00011 222 ProSiteProfiles Zinc finger RING-type profile. 176 217 IPR001841 -
Pral5088g00011 222 SMART ring_2 176 216 IPR001841 -
Pral5088g00011 222 PANTHER TARGET OF ERK KINASE MPK-1 124 221 - -
Pral5088g00011 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 221 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5088g00011 Pral-Chr5088 210927 213050 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5088g00011 162 220 C3H Transcription Factor Family AT4G26580 64.407 7.96e-18 79.0