Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5084g00012 ATGTATATAGCTATGGTTGGCAATTGCTTCGGTGCCTTGAATTGTTGTAAAGGGAAGAATGAAGCTGCTGGCCAGTCAGATGAACAAGTGATTGCAACTAAAACTTTTAGTTACAATTCAATGAGATCAGCCACAGGAGATTTTCATCCATCTACCAGAATTGGTGGAGGAGGTTATGGAGTTGTCTACAAGGGTGTATTAAGAGATGGTACTCAAGTTGCTATCAAGTCTCTGTCTGTAGAGTCTAAACAAGGAACAAAGGAATTTATGACAGAAACTGAAATTATATCAAAGATACAGCATCCAAACCTTGTGCAACTTATTGGCTGCTGTGTTGAGGGCCACCATCGGTTGTTGGTGTATGAGTTTTTGGAAAACAATAGCCTTGCAAGTTCTTTGCTTCGTTCCAAGAGCAGATGTGTTGCTCTGGATTGGCCAAAGAGGGCTGCTATCTGCTGTGGTACAGCTTATGGTCTTGAATTTCTTCATGAAGAGGCTCAACCAAGCATTGTTCACAGAGATATCAAGGCTAGCAACATACTGCTTGATGGGAACTTTAATCCTAAAATAGGGGATTTTGGCCTCGCAAAGCTTTTTCCTGACGATGTCACTCATGTTAGTACTCGAGTGGCAGGAACGGTGGGATATCTAGCGCCAGAATATGCACTTCTAGGACAACTTACAAAGAAGGCTGATGTGTACAGTTTCGGGATTCTCATGCTTGAAATAATCAGTGGTAAAAGTAGCAGTAAAGCCGCATTTGGAGATAATCTCTTGGTTCTAGTGGAATGGGCTTGGAAGCTGAGAGAAGAAGGCAGGCTTCTGGATATTGTAGATCCCGAACTAACTGCATACGATGAGACGCAGGTGTTGCGTTTCATTAAGGTTGCTCTGTTCTGTACCCAAGCATCCGCACAACACAGGCCCACCATGAAGCAAGTAATAAAAATGCTCACCAAGGATGTGCATTTGAATGAGAAGGCACTGACCGAACCTGGAGTTTATAGATGGAATAGCTCGAAAGAGTATGGCAATTATTCGTTAAATCAGACATCGTCTTCTCAAATAAACAAGTACAGAAGTTCCAAAAATCCCTACATGACATCAAGCCATTATAGTGGTGCTGATTTGGATACACAGATTCTTCCTAGGTAA 1155 0.4216 MYIAMVGNCFGALNCCKGKNEAAGQSDEQVIATKTFSYNSMRSATGDFHPSTRIGGGGYGVVYKGVLRDGTQVAIKSLSVESKQGTKEFMTETEIISKIQHPNLVQLIGCCVEGHHRLLVYEFLENNSLASSLLRSKSRCVALDWPKRAAICCGTAYGLEFLHEEAQPSIVHRDIKASNILLDGNFNPKIGDFGLAKLFPDDVTHVSTRVAGTVGYLAPEYALLGQLTKKADVYSFGILMLEIISGKSSSKAAFGDNLLVLVEWAWKLREEGRLLDIVDPELTAYDETQVLRFIKVALFCTQASAQHRPTMKQVIKMLTKDVHLNEKALTEPGVYRWNSSKEYGNYSLNQTSSSQINKYRSSKNPYMTSSHYSGADLDTQILPR 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5084g00012 384 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
Pral5084g00012 384 ProSitePatterns Protein kinases ATP-binding region signature. 54 76 IPR017441 GO:0005524
Pral5084g00012 384 Gene3D Transferase(Phosphotransferase) domain 1 124 332 - -
Pral5084g00012 384 FunFam Putative LRR receptor-like serine/threonine-protein kinase 124 330 - -
Pral5084g00012 384 CDD STKc_IRAK 67 320 - -
Pral5084g00012 384 FunFam Receptor-like serine/threonine-protein kinase At4g25390 16 123 - -
Pral5084g00012 384 Pfam Protein tyrosine and serine/threonine kinase 52 318 IPR001245 GO:0004672|GO:0006468
Pral5084g00012 384 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 33 355 - -
Pral5084g00012 384 SUPERFAMILY Protein kinase-like (PK-like) 29 318 IPR011009 -
Pral5084g00012 384 ProSiteProfiles Protein kinase domain profile. 48 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5084g00012 384 SMART serkin_6 48 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5084g00012 384 Gene3D Phosphorylase Kinase; domain 1 13 123 - -
Pral5084g00012 384 MobiDBLite consensus disorder prediction 365 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5084g00012 Pral-Chr5084 89672 95265 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5084g00012 31 379 Receptor kinase-like Gene Family AT1G53430 46.439 1.02e-106 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pral5084g00012 PK_Tyr_Ser-Thr 3.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5084g00012 - - gmx:100816683 565.074