Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5084g00004 ATGACTACTCTTCAACAAGAGGCAGTGATCATGGAGAATGGCAACATCAAGGGTTTGAGCAGGGAGCTGAGGCATGGCAGGACTGCTCATAACATGTCCTCTTCTTCCTTGCGCAAGAAATCCGACTTAACCCTTGTTTCCAAAGTTCAGTGGTGTTTACTCAGGAATTTGCTCGTCAATTTCCAGGAGGTCATTCTCGGCACCAAGTTATCGATTCTCTTTCTTGCGATTCCCTTTGCCATCGTCGCTGAAGTCTACAGGTTCGGTCGACCTTGGGCTTTTGCGTTGAGCTTACTAGCACTTACACCACTAGCTGAACGCGTCAGCTTCTTGACAGAACAAGTAGCTTATCACACGGGTCCAACAGTTGGAGGACTCTTGAATGCAACATTTGGCAATGTCACAGAACTCATAATAGCAATATTTGCTCTCAAAAATAATAAAATAGCTGTGCTCAAGTATTCTCTCTTGGGTTCAATCCTTTCAAACCTTCTTTTAGTTCTTGGAACCTCTCTCTTCAGTGGTGGAATAGCAAACATCAGAGTAGAACAAAAATTTGATAGGAAACAGGTAGATGTGAACTCACTTATGCTGCTGCTGGCATTTTTGTGCCACTTACTGCCTTTGCTGTTTAGATATTCTGGTACCTCAGCTACTCTCAATGCAGACTCATCTCTCCACTTGTCAAGAGCTGCAAGTATTGTGATGCTGACAGCGTATTTTGCTTACCTTGTCTTTCAACTTTGGACCCATCGCCGGTTATTTGAAGCCGAGGATGAAGAAGATGATAATGATAACGTTGCAGAAACAGCTGTAATAGGATTTTGGAGCGGGATTGCTTGGCTTGCTGCATTGACTGTACTCATTGCTATCTTGTCTCAATTTGTGGTGGAAACAATTGAGGGTGCTTCAGATTCATGGAGCCTTTCTGTCAGCTTCCTTAGCATTATCTTGTTGCCAATAGTTGGCAATGCAACTGAACATGCAGGAGCAATCATATTTGCTTTGAAGAACAAACTGGACATCTCATTAGGTGTTGCTTTAGGTTCTGCAACTCAGATATCCATGTTTGTGGTTCCTCTCTGTGTGGTTATTGCTTGGATGATGGGTATCAAAATGGACCTTGACTTCAATCTCCTTGAGACCGGTTCTCTTGCTTTGGCTATTTTAGTCCCATCCTTCACTTTACAGGATGGGACTTCTCACTACATGAAAGGCCTTGTTCTCCTGCTCTGCTACGTTGTTATTGGGGCATGCTTTTTTGTACAAGGAACACCACCCAACCAAGCTGATGTTCCAAACATGATCCTTAAATCCGCGACTGAAGCAGCTTAG 1335 0.436 MTTLQQEAVIMENGNIKGLSRELRHGRTAHNMSSSSLRKKSDLTLVSKVQWCLLRNLLVNFQEVILGTKLSILFLAIPFAIVAEVYRFGRPWAFALSLLALTPLAERVSFLTEQVAYHTGPTVGGLLNATFGNVTELIIAIFALKNNKIAVLKYSLLGSILSNLLLVLGTSLFSGGIANIRVEQKFDRKQVDVNSLMLLLAFLCHLLPLLFRYSGTSATLNADSSLHLSRAASIVMLTAYFAYLVFQLWTHRRLFEAEDEEDDNDNVAETAVIGFWSGIAWLAALTVLIAILSQFVVETIEGASDSWSLSVSFLSIILLPIVGNATEHAGAIIFALKNKLDISLGVALGSATQISMFVVPLCVVIAWMMGIKMDLDFNLLETGSLALAILVPSFTLQDGTSHYMKGLVLLLCYVVIGACFFVQGTPPNQADVPNMILKSATEAA 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5084g00004 444 Pfam Sodium/calcium exchanger protein 92 249 IPR004837 GO:0016020|GO:0055085
Pral5084g00004 444 Pfam Sodium/calcium exchanger protein 279 416 IPR004837 GO:0016020|GO:0055085
Pral5084g00004 444 NCBIfam calcium/proton exchanger 56 421 - -
Pral5084g00004 444 FunFam Vacuolar cation/proton exchanger 121 265 - -
Pral5084g00004 444 FunFam Vacuolar cation/proton exchanger 266 422 - -
Pral5084g00004 444 NCBIfam calcium/proton exchanger 74 421 IPR004798 GO:0006816|GO:0015369
Pral5084g00004 444 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 24 424 IPR004713 GO:0006812|GO:0008324|GO:0016020
Pral5084g00004 444 Gene3D - 121 261 IPR044880 -
Pral5084g00004 444 Gene3D - 264 422 IPR044880 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5084g00004 Pral-Chr5084 30278 35360 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5084g00004 10 429 Antiporters AT2G38170 68.531 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5084g00004 K07300 - qsa:O6P43_016607 602.823