Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral5082g00128 | ATGTCTTTCACTGGAACTCTGGATAAATGCAAGGCTTGCGATAAGACTGTTCATGTGGTGGACATGATGACCCTTGAGGGTACCCCTTACCATAAGTCCTGCTTCAAGTGCAGCCACTGCAAGGGATTTCTCTCGATGAGCAGCTACTCCTGGATGGACGGTGTCCTCTACTGCAAGCCCCATTTTGAGCAGCTCTTCAAGGAATCTGGCAATTTCAGCAAGAACTTCCAGTCGGCGAGGTCCACTGAGAAGAATGATCTGTCCAGGACTTCAAGCAAGCTCTCTTCCATGTTCAGCGGAACCCAAGACAAGTGCTCTGTGTGTGGAAAAACAGTGTATCCTCTGGAGAAGATGACGCTGGAAGGAGAGTGCTTCCACAAGTCGTGCTTCAGGTGTGCTCATGCAGGCTGCCCTCTCACCCATTCCTCGTACGCCGCCCTCGACGGCGTCCTCTACTGCAGGCACCACTTTGCTCAGCTCTTCATGGAGAAGGGAAATTACAACCATGTCCTCCAGGCCGCCGCTCACAAGCGCAGCGCCAGCTCCGGCACTCCTCCTCCCGAACCTGCTACTGAAGACGATGACGCCAGCCCTCATCATGACGACAAGAAGGACGACGACCCCAAAGATGATAAAGAAGAAGAAGAACAGGACCACTCTTAG | 663 | 0.5294 | MSFTGTLDKCKACDKTVHVVDMMTLEGTPYHKSCFKCSHCKGFLSMSSYSWMDGVLYCKPHFEQLFKESGNFSKNFQSARSTEKNDLSRTSSKLSSMFSGTQDKCSVCGKTVYPLEKMTLEGECFHKSCFRCAHAGCPLTHSSYAALDGVLYCRHHFAQLFMEKGNYNHVLQAAAHKRSASSGTPPPEPATEDDDASPHHDDKKDDDPKDDKEEEEQDHS | 220 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral5082g00128 | 220 | MobiDBLite | consensus disorder prediction | 174 | 220 | - | - | |
| Pral5082g00128 | 220 | ProSiteProfiles | LIM domain profile. | 103 | 163 | IPR001781 | - | |
| Pral5082g00128 | 220 | Pfam | LIM domain | 10 | 65 | IPR001781 | - | |
| Pral5082g00128 | 220 | Pfam | LIM domain | 105 | 160 | IPR001781 | - | |
| Pral5082g00128 | 220 | MobiDBLite | consensus disorder prediction | 192 | 207 | - | - | |
| Pral5082g00128 | 220 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 76 | - | - | |
| Pral5082g00128 | 220 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - | |
| Pral5082g00128 | 220 | Gene3D | Cysteine Rich Protein | 5 | 72 | - | - | |
| Pral5082g00128 | 220 | Gene3D | Cysteine Rich Protein | 99 | 169 | - | - | |
| Pral5082g00128 | 220 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 131 | 170 | - | - | |
| Pral5082g00128 | 220 | FunFam | LIM domain and actin-binding 1 | 99 | 169 | - | - | |
| Pral5082g00128 | 220 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 97 | 130 | - | - | |
| Pral5082g00128 | 220 | FunFam | LIM domain and actin-binding 1 | 4 | 74 | - | - | |
| Pral5082g00128 | 220 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - | |
| Pral5082g00128 | 220 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
| Pral5082g00128 | 220 | SMART | lim_4 | 104 | 156 | IPR001781 | - | |
| Pral5082g00128 | 220 | PANTHER | OS06G0237300 PROTEIN | 6 | 80 | - | - | |
| Pral5082g00128 | 220 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 35 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral5082g00128 | Pral-Chr5082 | 716458 | 717574 | Dispersed/Tandem |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Pral5082g00128 | LIM | 1.7e-10 | CL0167 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral5082g00128 | - | K09377 | hbr:110669517 | 337.421 |