Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral5082g00127 | ATGTCTTTCACTGGAACTCTGGATAAATGCAAGGCTTGCGATAAGACTGTTCATGTGGTGGACATGATGACCCTTGAGGGTACCCCTTACCATAAGTCCTGCTTCAAGTGCAGCCACTGCAAGGGATTTCTCTCGATGAGCAGCTACTCCTGGATGGACGGTGTCCTCTACTGCAAGCCCCATTTTGAGCAGCTCTTCAAGGAATCTGGCAATTTCAGCAAGAACTTCCAGTCGGGTAACTTGCATTCTATTTCCAGGACTTCAAGCAAGCTCTCTTCCATGTTCAGCGGAACCCAAGACAAGTGCTCTGTGTGTGGAAAAACAGTGTATCCTCTGGAGAAGATGACGCTGGAAGGAGAGTGCTTCCACAAGTCGTGCTTCAGGTGTGCTCATGCAGGCTGCCCTCTCACCCATTCCTCGTACGCCGCCCTCGACGGCGTCCTCTACTGCAGGCACCACTTTGCTCAGCTCTTCATGGAGAAGGGAAATTACAACCATGTCCTCCAGGCCGCCGCTCACAAGCGCAGCGCCAGCTCCGGCACTCCTCCTCCCGAACCTGCTACTGAAGACGATGACGCCAGCCCTCATCATGACGACAAGAAGGACGACGACCCCAAAGATGATAAAGAAGAAGAAGAACAGGACCACTCTTAG | 654 | 0.5245 | MSFTGTLDKCKACDKTVHVVDMMTLEGTPYHKSCFKCSHCKGFLSMSSYSWMDGVLYCKPHFEQLFKESGNFSKNFQSGNLHSISRTSSKLSSMFSGTQDKCSVCGKTVYPLEKMTLEGECFHKSCFRCAHAGCPLTHSSYAALDGVLYCRHHFAQLFMEKGNYNHVLQAAAHKRSASSGTPPPEPATEDDDASPHHDDKKDDDPKDDKEEEEQDHS | 217 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral5082g00127 | 217 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 76 | - | - | |
| Pral5082g00127 | 217 | ProSiteProfiles | LIM domain profile. | 100 | 160 | IPR001781 | - | |
| Pral5082g00127 | 217 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - | |
| Pral5082g00127 | 217 | PANTHER | OS06G0237300 PROTEIN | 6 | 77 | - | - | |
| Pral5082g00127 | 217 | Gene3D | Cysteine Rich Protein | 6 | 74 | - | - | |
| Pral5082g00127 | 217 | Gene3D | Cysteine Rich Protein | 96 | 166 | - | - | |
| Pral5082g00127 | 217 | SMART | lim_4 | 101 | 153 | IPR001781 | - | |
| Pral5082g00127 | 217 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
| Pral5082g00127 | 217 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - | |
| Pral5082g00127 | 217 | Pfam | LIM domain | 10 | 65 | IPR001781 | - | |
| Pral5082g00127 | 217 | Pfam | LIM domain | 102 | 157 | IPR001781 | - | |
| Pral5082g00127 | 217 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 94 | 127 | - | - | |
| Pral5082g00127 | 217 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 35 | - | - | |
| Pral5082g00127 | 217 | FunFam | LIM domain and actin-binding 1 | 4 | 74 | - | - | |
| Pral5082g00127 | 217 | MobiDBLite | consensus disorder prediction | 171 | 217 | - | - | |
| Pral5082g00127 | 217 | FunFam | LIM domain and actin-binding 1 | 96 | 166 | - | - | |
| Pral5082g00127 | 217 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 128 | 168 | - | - | |
| Pral5082g00127 | 217 | MobiDBLite | consensus disorder prediction | 189 | 204 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral5082g00127 | Pral-Chr5082 | 716458 | 717574 | Dispersed/Tandem |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Pral5082g00127 | LIM | 1.6e-10 | CL0167 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral5082g00127 | - | K09377 | hbr:110669517 | 329.717 |