LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral5082g00123	ATGAACAATAGAGCAAGATACCCACCTGGGATTGGCGTTGGCCGTGGAGGGGTGAACTCGAACGCTGCGTTTCAGCCCAGGCCGCCTCATCAACAACAGTACGTGCAGAGGCACTTAGCATCGCAACATCAACAGTACCGCCACCATCATCAACAACAGCAGTATCAGCAGCATCAACCGCAGCAGCAGAATCAACAGCATCATCACCAAGAACAACAGTGGCTGAGACGGACGCAGCCGGGTGCTGCTGATTCCAATGCGGTTGACGAGGTCGAGAAGACTGTCCAGTCTGAAGCCGTTGACCCTAGTTCACAAGATTGGAAGGCAAGGCTAAAGATACCACCACCTGATACCCGATACAAAACAGAGGATGTAACAGCGACTAAAGGAAATGAATTTGAGGATTACTTTTTGAAGCGTGAGTTGCTTATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCTATTCAGGAAGAAAGTATACCAATTGCACTTACTGGTAGTGACATTCTTGCTAGGGCAAAGAATGGGACAGGAAAAACAGCTGCCTTTTGCATTCCTGCGTTGGAAAAAATTGACCAGGATAACAATGTTATTCAAGTTGTTATATTGGTCCCAACACGAGAGTTGGCCTTGCAAACATCTCAAGTGTGCAAAGAGCTTGGGAAACATTTGAAAATTCAAGTTATGGTTACAACAGGTGGTACCAGCCTAAAGGATGATATTATGCGGTTATATCAGCCAGTCCATTTACTAGTTGGAACACCAGGACGAATATTAGATCTTGTGAAGAAGGGTGTTTGTGTTTTGAAAGATTGCAATATGCTTGTTATGGATGAGGCTGATAAGCTCCTCTCCCCAGAGTTCCAGCCTTCAGTAGAGCAGTTGATTCATTTCCTGCCTACCAATCGTCAAATCTTGATGTTTTCAGCCACTTTTCCTGTCACCATTAAGGACTTTAAAGATAGATATCTTCAAAAGCCTTACGTTATTAACCTTATGGACGAGTTGACTTTGAAAGGGATCACACAATTTTATGCATTTGTGGAGGAGAGACAGAAACTCCACTGCTTGAACACTCTCTTCTCGAAGCTGCAAATAAACCAGTCAATTATTTTCTGCAATTCAGTGAACCGAGTTGAGCTCCTTGCCAAGAAAATTACAGAACTTGGGTATTCATGCTTCTATATTCATGCAAAGATGTTGCAGGATCATCGCAATAGAGTATTTCATGATTTCCGCAATGGTGCATGTAGGAATCTTGTTTGTACTGATCTTTTTACTAGAGGAATAGACATTCAAGCTGTCAATGTTGTCATTAATTTTGATTTTCCAAAGAACTCAGAAACTTACCTGCACAGGGTTGGTCGATCAGGGAGGTTTGGTCACCTTGGTTTAGCTGTGAACTTGATTACTTATGAAGACCGCTTTAATTTATATAGGATTGAACAAGAACTTGGCACTGAAATAAAGCAAATCCCACCTCACATTGATCAGGCAATTTATTGCCGGTGA	1518	0.4262	MNNRARYPPGIGVGRGGVNSNAAFQPRPPHQQQYVQRHLASQHQQYRHHHQQQQYQQHQPQQQNQQHHHQEQQWLRRTQPGAADSNAVDEVEKTVQSEAVDPSSQDWKARLKIPPPDTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLVKKGVCVLKDCNMLVMDEADKLLSPEFQPSVEQLIHFLPTNRQILMFSATFPVTIKDFKDRYLQKPYVINLMDELTLKGITQFYAFVEERQKLHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR	505

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral5082g00123	505	CDD	SF2_C_DEAD	343	472	-	-
	Pral5082g00123	505	FunFam	ATP-dependent RNA helicase DDX6	112	335	-	-
	Pral5082g00123	505	Pfam	Helicase conserved C-terminal domain	356	463	IPR001650	-
	Pral5082g00123	505	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	201	485	IPR027417	-
	Pral5082g00123	505	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	342	502	IPR001650	-
	Pral5082g00123	505	Gene3D	-	336	505	IPR027417	-
	Pral5082g00123	505	SMART	ultradead3	150	346	IPR014001	-
	Pral5082g00123	505	Gene3D	-	89	335	IPR027417	-
	Pral5082g00123	505	SMART	helicmild6	382	463	IPR001650	-
	Pral5082g00123	505	CDD	DEADc_DDX6	133	333	-	-
	Pral5082g00123	505	MobiDBLite	consensus disorder prediction	1	122	-	-
	Pral5082g00123	505	MobiDBLite	consensus disorder prediction	24	80	-	-
	Pral5082g00123	505	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	61	504	-	-
	Pral5082g00123	505	Pfam	DEAD/DEAH box helicase	156	320	IPR011545	GO:0003676\|GO:0005524
	Pral5082g00123	505	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	162	332	IPR014001	-
	Pral5082g00123	505	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	278	286	IPR000629	-
	Pral5082g00123	505	FunFam	ATP-dependent RNA helicase DDX6	336	505	-	-
	Pral5082g00123	505	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	131	159	IPR014014	GO:0003724

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral5082g00123	Pral-Chr5082	693883	701315	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral5082g00123	131	502	Eukaryotic Initiation Factors Gene Family	AT3G19760	38.235	4.67e-95	292

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral5082g00123	K12614		-	cpap:110819449	887.486