Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5082g00122 ATGAACAATAGAGCAAGATACCCACCTGGGATTGGCGTTGGCCGTGGAGGGGTGAACTCGAACGCTGCGTTTCAGCCCAGGCCGCCTCATCAACAACAGTACGTGCAGAGGCACTTAGCATCGCAACATCAACAGTACCGCCACCATCATCAACAACAGCAGTATCAGCAGCATCAACCGCAGCAGCAGAATCAACAGCATCATCACCAAGAACAACAGTGGCTGAGACGGACGCAGCCGGGTGCTGCTGATTCCAATGCGGTTGACGAGGTCGAGAAGACTGTCCAGTCTGAAGCCGTTGACCCTAGTTCACAAGATTGGAAGGCAAGGCTAAAGATACCACCACCTGATACCCGATACAAAACAGAGGATGTAACAGCGACTAAAGGAAATGAATTTGAGGATTACTTTTTGAAGCGTGAGTTGCTTATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCTATTCAGGAAGAAAGTATACCAATTGCACTTACTGGTAGTGACATTCTTGCTAGGGCAAAGAATGGGACAGGAAAAACAGCTGCCTTTTGCATTCCTGCGTTGGAAAAAATTGACCAGGATAACAATGTTATTCAAGTTGTTATATTGGTCCCAACACGAGAGTTGGCCTTGCAAACATCTCAAGTGTGCAAAGAGCTTGGGAAACATTTGAAAATTCAAGTTATGGTTACAACAGGTGGTACCAGCCTAAAGGATGATATTATGCGGTTATATCAGCCAGTCCATTTACTAGTTGGAACACCAGGACGAATATTAGATCTTGTGAAGAAGGGTGTTTGTGTTTTGAAAGATTGCAATATGCTTGTTATGGATGAGGCTGATAAGCTCCTCTCCCCAGAGTTCCAGCCTTCAGTAGAGCAGTTGATTCATTTCCTGCCTACCAATCGTCAAATCTTGATGTTTTCAGCCACTTTTCCTGTCACCATTAAGGACTTTAAAGATAGATATCTTCAAAAGCCTTACGTTATTAACCTTATGGACGAGTTGACTTTGAAAGGGATCACACAATTTTATGCATTTGTGGAGGAGAGACAGAAACTCCACTGCTTGAACACTCTCTTCTCGAAGCTGCAAATAAACCAGTCAATTATTTTCTGCAATTCAGTGAACCGAGTTGAGCTCCTTGCCAAGAAAATTACAGAACTTGGGTATTCATGCTTCTATATTCATGCAAAGATGTTGCAGGATCATCGCAATAGAGTATTTCATGATTTCCGCAATGGTGCATGTAGGAATCTTGTTTGTACTGGTTGGTCGATCAGGGAGGTTTGGTCACCTTGGTTTAGCTGTGAACTTGATTACTTATGA 1335 0.4352 MNNRARYPPGIGVGRGGVNSNAAFQPRPPHQQQYVQRHLASQHQQYRHHHQQQQYQQHQPQQQNQQHHHQEQQWLRRTQPGAADSNAVDEVEKTVQSEAVDPSSQDWKARLKIPPPDTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLVKKGVCVLKDCNMLVMDEADKLLSPEFQPSVEQLIHFLPTNRQILMFSATFPVTIKDFKDRYLQKPYVINLMDELTLKGITQFYAFVEERQKLHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTGWSIREVWSPWFSCELDYL 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5082g00122 444 Gene3D - 336 428 IPR027417 -
Pral5082g00122 444 CDD SF2_C_DEAD 343 425 - -
Pral5082g00122 444 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 333 IPR027417 -
Pral5082g00122 444 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 338 426 IPR027417 -
Pral5082g00122 444 SMART ultradead3 150 346 IPR014001 -
Pral5082g00122 444 CDD DEADc_DDX6 133 333 - -
Pral5082g00122 444 MobiDBLite consensus disorder prediction 1 122 - -
Pral5082g00122 444 MobiDBLite consensus disorder prediction 24 80 - -
Pral5082g00122 444 FunFam ATP-dependent RNA helicase DDX6 112 335 - -
Pral5082g00122 444 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 342 444 IPR001650 -
Pral5082g00122 444 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 162 332 IPR014001 -
Pral5082g00122 444 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 278 286 IPR000629 -
Pral5082g00122 444 Pfam DEAD/DEAH box helicase 156 320 IPR011545 GO:0003676|GO:0005524
Pral5082g00122 444 Pfam Helicase conserved C-terminal domain 356 425 IPR001650 -
Pral5082g00122 444 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 131 159 IPR014014 GO:0003724
Pral5082g00122 444 Gene3D - 89 335 IPR027417 -
Pral5082g00122 444 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 61 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5082g00122 Pral-Chr5082 693881 700429 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5082g00122 133 434 Eukaryotic Initiation Factors Gene Family AT3G19760 35.855 2.93e-66 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5082g00122 K12614 - cpap:110819449 724.931