Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5082g00115 ATGGATCGAGGGGACCATATGGCGTTATCTGGGTCTGCGTCTTACTATATGCAGAGAGGGCTTGCTGGTGCTGGGGCACAACCTGAGTTACATGGTTCCCCGGGCATTCGTCCTCTGTCCAATCCCAATCTGCCATTTCAACCTGGCATTGGAGGTGGCGCCGCCATTGGATCCACGTTACCTGTAGAATCTTCAGCAATTTCACCTCATGGTGTCAATGTGGGTGCTCCTCCTGGTGCACCGCCGGGAGAACCTGTCAAAAGGAAGAGAGGAAGGCCTAGGAAATATGGTCCGGATGGAAGTGTATCATTGGCCTTGACTCCATCTTCTGGTCATCTCAGTGGAGCATTGACGCAAAGCCAGAAGCGAGGTAGAGGCCGTCCTCCGGGATCTGGAAAGAAACAGCAGTTGGCCTCTCTTGGTGAATTGATGTCTGGTTCAGCGGGGATGGGCTTTACTCCTCATATCATCACCATTGCAGTTGGAGAAGACATTGCAACAAAAATAATGGCATTTTCTCAGCAAGGACCTAGAGCCGTATGCATTTTGTCGGCAAACGGTGCTGTCTCTAATGTGACGCTTCGACAGCCTTCAAGTTCAGGTGGCACGGTCACATACGAGGGGCGTTTTGAGATATTGTGCCTATCGGGCTCTTATTTGCTCACTGAAAGTGGTGGCTCTCGCAATCGAACTGGTAGTCTTAGTGTTTCGCTAGCCAGTCCTGATGGCCGTGTCATTGGTGGTGGGGTTGGTGGATTGTTGATTGCAGCAAGTCCTGTTCAGGTGATAGTTGGGAGCTTCATATGGGGTGGATCAAAGACAAAGAGCAAGAAAAAGGAGGTTGCACAAGAAGCAGAAGTAGCCATGGAATCAGATCATCATCATCATCAGCAGCAGCAGCAGCAAGCGGTTCATAATCCACCTGCATTGAACAGCATTTCACCTAATCAAAATCTCACCCAAGCTTCATCTATGAGTTCCTGGCCTCCTGCTTCTCGTCAATTGGACATGCGTAATTCCCATGTTGACATTGATTTAATGCGTGGGTGA 1050 0.4981 MDRGDHMALSGSASYYMQRGLAGAGAQPELHGSPGIRPLSNPNLPFQPGIGGGAAIGSTLPVESSAISPHGVNVGAPPGAPPGEPVKRKRGRPRKYGPDGSVSLALTPSSGHLSGALTQSQKRGRGRPPGSGKKQQLASLGELMSGSAGMGFTPHIITIAVGEDIATKIMAFSQQGPRAVCILSANGAVSNVTLRQPSSSGGTVTYEGRFEILCLSGSYLLTESGGSRNRTGSLSVSLASPDGRVIGGGVGGLLIAASPVQVIVGSFIWGGSKTKSKKKEVAQEAEVAMESDHHHHQQQQQQAVHNPPALNSISPNQNLTQASSMSSWPPASRQLDMRNSHVDIDLMRG 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5082g00115 349 CDD DUF296 153 267 IPR005175 -
Pral5082g00115 349 MobiDBLite consensus disorder prediction 300 334 - -
Pral5082g00115 349 Gene3D - 154 296 - -
Pral5082g00115 349 SUPERFAMILY AF0104/ALDC/Ptd012-like 152 269 - -
Pral5082g00115 349 MobiDBLite consensus disorder prediction 282 299 - -
Pral5082g00115 349 MobiDBLite consensus disorder prediction 103 125 - -
Pral5082g00115 349 MobiDBLite consensus disorder prediction 282 336 - -
Pral5082g00115 349 Pfam Plants and Prokaryotes Conserved (PCC) domain 154 267 IPR005175 -
Pral5082g00115 349 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 72 327 IPR039605 GO:0003680
Pral5082g00115 349 SMART AT_hook_2 122 134 IPR017956 GO:0003677
Pral5082g00115 349 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Pral5082g00115 349 MobiDBLite consensus disorder prediction 24 137 - -
Pral5082g00115 349 ProSiteProfiles PPC domain profile profile. 148 288 IPR005175 -
Pral5082g00115 349 FunFam AT-hook motif nuclear-localized protein 1-like 154 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5082g00115 Pral-Chr5082 651012 656290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5082g00115 1 349 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 52.473 6.48e-96 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5082g00115 - - gmx:100799791 489.574