Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5082g00094 ATGGGGGAATTTGTAGGGGAGCCTAACCCAGAGGCGGTTGAAGAGAAAATCTATGTTGCTGTGTCTAAAGATGTAAAAGGGTGCAAATTAAATCTGATATGGGCGATACAAAATTCCGGGGGAAAGAAGATTTGCATCCTCCACGTCCATGAGCCTGCAACAATGATCCCCCTGATGGGTACAAAGTTTCCAGCAAGTGCACTGAAAGACCAGGAAGTTGAAGCATATAGGGAAACAGAGAGGCAAAACATGCATAAAATTCTGAATGAGTATCTTCTAATTTGTCAGCGGATGGGGGTGCGAGCAGAGAAACTGCATATTGAACGGGATTGCATTGAGAAAGGAATCGTGGAACTTGTGTCGGAGTATGACATTCGGAAGCTTGTTATGGGAGCAGCATCTGATAAGTCCTATTTTAGGAAAATGATGGACTTGGGATCTAAGAAAGCCATCTATGTACGAGAACAAGCTTCAGCTTCTTGTCATATACAATTTATCTGCAAAGGGCATCATATATACACAAGGTACAGTAGTTTGGACAAAAGTAAAGGAGAGGCTGCATCTCCTGTCTGTCTGCGAAAGTCACAACCTAATGCTGGACGGGTACACTTCTTGAGATCTCAATCTATTGAACTTGGGCGGAATCAATGGGCAAGACTCACAAATCCAGCTCAAGATCTATTCCGAAGAGTGAGGTCTGGCAATGCTAGAGATGAAGGGAGCATGGCAACTGTTTCTTCTCCAGATGACACTGAAGGATTGTCAACTCCACATATCAGGCTGGGTACAGAAGTGAGTTCTGATGAGTCGGAAGGACTGTTTGGAAGAAGTTCTTCAGTTTTCTCAACATTCTCTGATAGTGGTGCAGTTGAAGCAGGGTCAACCTCAGATTTGATCACTGCACGGTTTGAGAATGTATTAAACTTGAATGGACATTCTTCAGATGGAGGAATGGACTATACTCTGTATGATAAACTTGAACAGGCCACGGGTGAGGCTGATGATGCTAGGCAGGATGCATGCCAAGAAACTATTAGACGTGGGAAAGCTGAAAAAGATGCCCTTGATGCTATACGCAGGGCCAAAGCCTCTGAAATCTCATATAAAGAGGAGTTGAAACTGAGGAAAGAGGTAGAGGAAGCACTGGCAAAAACAAGGGAAGAACTTGGACCGATGAAGATCCAAAGAGATAAAGTACATGAAGAACTTCGGCTTGCCTTAGATCAGAAATCATCACTAGAGAGTCAAATTTCATCTTCAGAACTAATGGCAAAGGAGTTGGAGCAGAAGATTATCTCTGCTGTGGGTCTGCTGCAAAGTTACAAGAAAGAACGTGATGAATTGGAGATGCAGCGTGATAATGCATTGAGGGAGGCTGAAGAATTGAGGGAAAAACCAGCTGAGGCCCCTGGTATACATGTGCCTCAGTTTTTCTTAGAATTCTCTTTTCCAGAGATTGAAGAAGCAACGAATAATTTTAATCCATCCCGAAGGATTGGAGAAGGTGGATATGGCAGTATATATAAAGGTGTGCTGCGTCACACTGAGGTGGCTATCAAAATGTTGAACCTTAACAGTTTGCAAGGGCCTTCAGAGTTTCAAAAGGAGGTTGACATACTGAGTAAGTTAAGGCATCCCAATGTTATTACATTCATTGGAGCCTGTCCGGAGTCCTGGGCTCTTGTCTATGAGTATTTACCCAATGGAAGCCTGGAGGATAGGCTCAGCTGCAAGGATAACACACCCCCATTATCATGGCAAACTCGAATTCACATTGCTGCAGAGCAGTGCTCTGCTCTCATCTTTCTTCATTCTAGTAAACCTCACAGCATTGTGCATGGTGACTTAAAACCCTCCAATATTCTCCTTGATGCAAACCTTGTTAGCAAGCTTAGTGACTTTGGAATCAGTCGTCTATTATCTCGTCACGGGAGTTCAAGTAACAATACTACAGAGTGCTGGAGAACTGACCCAAAGGGCACTTTTGTCTACATGGATCCTGAATTCCTTGCTTCAGGGGAACTTACTCCAAAGTCAGATATATATTCACTTGGAATCATATTATTAAGATTGTTGACCGGGAGACCAGCCTTGGGAATAAGGCAGGAAGTGAAAAGTGCATTGGATGCTGGAAAGTTGAAATCCCTCTTGGATCCTTTGGCTGGCGACTGGCCATTTGTGCAGGCTGAACAGTTGTGTCACTTGGCATTGAGATGCTGTGAGATGAACCGAAAGAGCCGGCCAGACCTCTATTCAGATGTCTGGAGGATTCTGGAACCAATGAGCGCTTCTTCTGGAGGCACAAATGTCTTCAGAGTTGGTTCTGGAGGGCTTTACCAAACCCCTTCGTATTTCATTTGTCCAATCTTCCAGGAAGTCATGCAAGATCCGCATGTTGCTGCGGATGGATTTACTTACGAAGCAGAGGCAATACGAGGATGGCTGGACAGTGGTCATGAGGCCTCTCCAATGACAAATGATAAACTTGCACACTGCAATCTTGTCCCTAACCTTGCCCTTCGCTCTGCAATCCACGATTGGCTTCAAAACCGCTGA 2556 0.4441 MGEFVGEPNPEAVEEKIYVAVSKDVKGCKLNLIWAIQNSGGKKICILHVHEPATMIPLMGTKFPASALKDQEVEAYRETERQNMHKILNEYLLICQRMGVRAEKLHIERDCIEKGIVELVSEYDIRKLVMGAASDKSYFRKMMDLGSKKAIYVREQASASCHIQFICKGHHIYTRYSSLDKSKGEAASPVCLRKSQPNAGRVHFLRSQSIELGRNQWARLTNPAQDLFRRVRSGNARDEGSMATVSSPDDTEGLSTPHIRLGTEVSSDESEGLFGRSSSVFSTFSDSGAVEAGSTSDLITARFENVLNLNGHSSDGGMDYTLYDKLEQATGEADDARQDACQETIRRGKAEKDALDAIRRAKASEISYKEELKLRKEVEEALAKTREELGPMKIQRDKVHEELRLALDQKSSLESQISSSELMAKELEQKIISAVGLLQSYKKERDELEMQRDNALREAEELREKPAEAPGIHVPQFFLEFSFPEIEEATNNFNPSRRIGEGGYGSIYKGVLRHTEVAIKMLNLNSLQGPSEFQKEVDILSKLRHPNVITFIGACPESWALVYEYLPNGSLEDRLSCKDNTPPLSWQTRIHIAAEQCSALIFLHSSKPHSIVHGDLKPSNILLDANLVSKLSDFGISRLLSRHGSSSNNTTECWRTDPKGTFVYMDPEFLASGELTPKSDIYSLGIILLRLLTGRPALGIRQEVKSALDAGKLKSLLDPLAGDWPFVQAEQLCHLALRCCEMNRKSRPDLYSDVWRILEPMSASSGGTNVFRVGSGGLYQTPSYFICPIFQEVMQDPHVAADGFTYEAEAIRGWLDSGHEASPMTNDKLAHCNLVPNLALRSAIHDWLQNR 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5082g00094 851 ProSiteProfiles U-box domain profile. 780 851 IPR003613 GO:0004842|GO:0016567
Pral5082g00094 851 Coils Coil 368 388 - -
Pral5082g00094 851 MobiDBLite consensus disorder prediction 235 257 - -
Pral5082g00094 851 SMART serkin_6 493 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5082g00094 851 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 36 133 - -
Pral5082g00094 851 SUPERFAMILY RING/U-box 777 849 - -
Pral5082g00094 851 Pfam U-box domain 782 850 IPR003613 GO:0004842|GO:0016567
Pral5082g00094 851 SMART Ubox_2 784 847 IPR003613 GO:0004842|GO:0016567
Pral5082g00094 851 Gene3D Phosphorylase Kinase; domain 1 478 565 - -
Pral5082g00094 851 MobiDBLite consensus disorder prediction 239 253 - -
Pral5082g00094 851 ProSitePatterns Protein kinases ATP-binding region signature. 499 520 IPR017441 GO:0005524
Pral5082g00094 851 ProSitePatterns Serine/Threonine protein kinases active-site signature. 611 623 IPR008271 GO:0004672|GO:0006468
Pral5082g00094 851 Gene3D HUPs 11 147 IPR014729 -
Pral5082g00094 851 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 780 851 IPR013083 -
Pral5082g00094 851 SUPERFAMILY Protein kinase-like (PK-like) 474 751 IPR011009 -
Pral5082g00094 851 Pfam Protein kinase domain 495 749 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5082g00094 851 ProSiteProfiles Protein kinase domain profile. 493 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5082g00094 851 Gene3D Transferase(Phosphotransferase) domain 1 566 769 - -
Pral5082g00094 851 CDD STK_N 16 169 - -
Pral5082g00094 851 CDD RING-Ubox_WDSUB1-like 782 837 - -
Pral5082g00094 851 Coils Coil 396 465 - -
Pral5082g00094 851 PANTHER OS02G0152300 PROTEIN 17 845 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5082g00094 Pral-Chr5082 533386 539753 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5082g00094 4 850 U-box Gene Family AT2G45910 54.900 0.0 905
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Pral5082g00094 Pkinase 1.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5082g00094 - - gmx:100807515 1175.61