Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5082g00093 ATGGGGGAATTTGTAGGGGAGCCTAACCCAGAGGCGGTTGAAGAGAAAATCTATGTTGCTGTGTCTAAAGATGTAAAAGGGTGCAAATTAAATCTGATATGGGCGATACAAAATTCCGGGGGAAAGAAGATTTGCATCCTCCACGTCCATGAGCCTGCAACAATGATCCCCCTGATGGGTACAAAGTTTCCAGCAAGTGCACTGAAAGACCAGGAAGTTGAAGCATATAGGGAAACAGAGAGGCAAAACATGCATAAAATTCTGAATGAGTATCTTCTAATTTGTCAGCGGATGGGGGTGCGAGCAGAGAAACTGCATATTGAACGGGATTGCATTGAGAAAGGAATCGTGGAACTTGTGTCGGAGTATGACATTCGGAAGCTTGTTATGGGAGCAGCATCTGATAAGTCCTATTTTAGGAAAATGATGGACTTGGGATCTAAGAAAGCCATCTATGTACGAGAACAAGCTTCAGCTTCTTGTCATATACAATTTATCTGCAAAGGGCATCATATATACACAAGTAGTTTGGACAAAAGTAAAGGAGAGGCTGCATCTCCTGTCTGTCTGCGAAAGTCACAACCTAATGCTGGACGGGTACACTTCTTGAGATCTCAATCTATTGAACTTGGGCGGAATCAATGGGCAAGACTCACAAATCCAGCTCAAGATCTATTCCGAAGAGTGAGGTCTGGCAATGCTAGAGATGAAGGGAGCATGGCAACTGTTTCTTCTCCAGATGACACTGAAGGATTGTCAACTCCACATATCAGGCTGGGTACAGAAGTGAGTTCTGATGAGTCGGAAGGACTGTTTGGAAGAAGTTCTTCAGTTTTCTCAACATTCTCTGATAGTGGTGCAGTTGAAGCAGGGTCAACCTCAGATTTGATCACTGCACGGTTTGAGAATGTATTAAACTTGAATGGACATTCTTCAGTTAAGGGGGATCTTTCTCATTCATCTCCTCCTAGTGTGCTGGATGGAGGAATGGACTATACTCTGTATGATAAACTTGAACAGGCCACGGGTGAGGCTGATGATGCTAGGCAGGATGCATGCCAAGAAACTATTAGACGTGGGAAAGCTGAAAAAGATGCCCTTGATGCTATACGCAGGGCCAAAGCCTCTGAAATCTCATATAAAGAGGAGTTGAAACTGAGGAAAGAGGTAGAGGAAGCACTGGCAAAAACAAGGGAAGAACTTGGACCGATGAAGATCCAAAGAGATAAAGTACATGAAGAACTTCGGCTTGCCTTAGATCAGAAATCATCACTAGAGAGTCAAATTTCATCTTCAGAACTAATGGCAAAGGAGTTGGAGCAGAAGATTATCTCTGCTGTGGGTCTGCTGCAAAGTTACAAGAAAGAACGTGATGAATTGGAGATGCAGCGTGATAATGCATTGAGGGAGGCTGAAGAATTGAGGGAAAAACCAGCTGAGGCCCCTGGTATACATGTGCCTCAGTTTTTCTTAGAATTCTCTTTTCCAGAGATTGAAGAAGCAACGAATAATTTTAATCCATCCCGAAGGATTGGAGAAGGTGGATATGGCAGTATATATAAAGGTGTGCTGCGTCACACTGAGGTGGCTATCAAAATGTTGAACCTTAACAGTTTGCAAGGGCCTTCAGAGTTTCAAAAGGAGGTTGACATACTGAGTAAGTTAAGGCATCCCAATGTTATTACATTCATTGGAGCCTGTCCGGAGTCCTGGGCTCTTGTCTATGAGTATTTACCCAATGGAAGCCTGGAGGATAGGCTCAGCTGCAAGGATAACACACCCCCATTATCATGGCAAACTCGAATTCACATTGCTGCAGAGCAGTGCTCTGCTCTCATCTTTCTTCATTCTAGTAAACCTCACAGCATTGTGCATGGTGACTTAAAACCCTCCAATATTCTCCTTGATGCAAACCTTGTTAGCAAGCTTAGTGACTTTGGAATCAGTCGTCTATTATCTCGTCACGGGAGTTCAAGTAACAATACTACAGAGTGCTGGAGAACTGACCCAAAGGGCACTTTTGTCTACATGGATCCTGAATTCCTTGCTTCAGGGGAACTTACTCCAAAGTCAGATATATATTCACTTGGAATCATATTATTAAGATTGTTGACCGGGAGACCAGCCTTGGGAATAAGGCAGGAAGTGAAAAGTGCATTGGATGCTGGAAAGTTGAAATCCCTCTTGGATCCTTTGGCTGGCGACTGGCCATTTGTGCAGGCTGAACAGTTGTGTCACTTGGCATTGAGATGCTGTGAGATGAACCGAAAGAGCCGGCCAGACCTCTATTCAGATGTCTGGAGGATTCTGGAACCAATGAGCGCTTCTTCTGGAGGCACAAATGTCTTCAGAGTTGGTTCTGGAGGGCTTTACCAAACCCCTTCGTATTTCATTTGTCCAATCTTCCAGGAAGTCATGCAAGATCCGCATGTTGCTGCGGATGGATTTACTTACGAAGCAGAGGCAATACGAGGATGGCTGGACAGTGGTCATGAGGCCTCTCCAATGACAAATGATAAACTTGCACACTGCAATCTTGTCCCTAACCTTGCCCTTCGCTCTGCAATCCACGATTGGCTTCAAAACCGCTGA 2592 0.4444 MGEFVGEPNPEAVEEKIYVAVSKDVKGCKLNLIWAIQNSGGKKICILHVHEPATMIPLMGTKFPASALKDQEVEAYRETERQNMHKILNEYLLICQRMGVRAEKLHIERDCIEKGIVELVSEYDIRKLVMGAASDKSYFRKMMDLGSKKAIYVREQASASCHIQFICKGHHIYTSSLDKSKGEAASPVCLRKSQPNAGRVHFLRSQSIELGRNQWARLTNPAQDLFRRVRSGNARDEGSMATVSSPDDTEGLSTPHIRLGTEVSSDESEGLFGRSSSVFSTFSDSGAVEAGSTSDLITARFENVLNLNGHSSVKGDLSHSSPPSVLDGGMDYTLYDKLEQATGEADDARQDACQETIRRGKAEKDALDAIRRAKASEISYKEELKLRKEVEEALAKTREELGPMKIQRDKVHEELRLALDQKSSLESQISSSELMAKELEQKIISAVGLLQSYKKERDELEMQRDNALREAEELREKPAEAPGIHVPQFFLEFSFPEIEEATNNFNPSRRIGEGGYGSIYKGVLRHTEVAIKMLNLNSLQGPSEFQKEVDILSKLRHPNVITFIGACPESWALVYEYLPNGSLEDRLSCKDNTPPLSWQTRIHIAAEQCSALIFLHSSKPHSIVHGDLKPSNILLDANLVSKLSDFGISRLLSRHGSSSNNTTECWRTDPKGTFVYMDPEFLASGELTPKSDIYSLGIILLRLLTGRPALGIRQEVKSALDAGKLKSLLDPLAGDWPFVQAEQLCHLALRCCEMNRKSRPDLYSDVWRILEPMSASSGGTNVFRVGSGGLYQTPSYFICPIFQEVMQDPHVAADGFTYEAEAIRGWLDSGHEASPMTNDKLAHCNLVPNLALRSAIHDWLQNR 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5082g00093 863 PANTHER OS02G0152300 PROTEIN 17 857 - -
Pral5082g00093 863 ProSiteProfiles U-box domain profile. 792 863 IPR003613 GO:0004842|GO:0016567
Pral5082g00093 863 SMART serkin_6 505 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5082g00093 863 SMART Ubox_2 796 859 IPR003613 GO:0004842|GO:0016567
Pral5082g00093 863 Coils Coil 408 477 - -
Pral5082g00093 863 SUPERFAMILY RING/U-box 789 861 - -
Pral5082g00093 863 Pfam U-box domain 794 862 IPR003613 GO:0004842|GO:0016567
Pral5082g00093 863 Coils Coil 380 400 - -
Pral5082g00093 863 Gene3D HUPs 11 147 IPR014729 -
Pral5082g00093 863 CDD RING-Ubox_WDSUB1-like 794 849 - -
Pral5082g00093 863 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 36 133 - -
Pral5082g00093 863 MobiDBLite consensus disorder prediction 233 255 - -
Pral5082g00093 863 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 792 863 IPR013083 -
Pral5082g00093 863 SUPERFAMILY Protein kinase-like (PK-like) 486 763 IPR011009 -
Pral5082g00093 863 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672|GO:0006468
Pral5082g00093 863 ProSitePatterns Protein kinases ATP-binding region signature. 511 532 IPR017441 GO:0005524
Pral5082g00093 863 CDD STK_N 16 169 - -
Pral5082g00093 863 Gene3D Phosphorylase Kinase; domain 1 490 577 - -
Pral5082g00093 863 ProSiteProfiles Protein kinase domain profile. 505 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5082g00093 863 Gene3D Transferase(Phosphotransferase) domain 1 578 781 - -
Pral5082g00093 863 Pfam Protein kinase domain 507 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5082g00093 863 MobiDBLite consensus disorder prediction 237 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5082g00093 Pral-Chr5082 533386 539753 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5082g00093 4 862 U-box Gene Family AT2G45910 54.588 0.0 900
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Pral5082g00093 Pkinase 1.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5082g00093 - - gmx:100807515 1196.42