Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5082g00082 ATGCAGTTGCAACAATCTCGGAAGTTCAATGAATTAACCCAACAGGGTCCCAGCCAAGAGGCCCAACTCAAGGTTCAAAACATTGAGCAGCAAATGCTAAATCCTGTTCATCAAGCATACCTTCAATATGCACTCCAGGCTGCCCAACAAAAGTCTGCTTTGGCAAGCCAGTCTCAGCAGCAAAATAAAATAGGGATGTTAGGGTCTTCATCTGTGAAGGATCAAGAAATGCGTATGGGAAATTTGAAAATGCAGGAGCTTATGTCTATGCAGGCAGTAAATCAAGCTCAAGGATCTACCTCCAGGAATGTATCTGAACAATTTTCTCATGGGGAAAGGAAGATAGAGCAGGGACAGCAGTTAGCCCCTGATCTAAAAAGTGAGGGAAAGCCTTCAACCCAGGGACCGGCCGCAGCACAATTAATGCCTGGAAATATGATAAGACCTGTACAAACACCCAATGCTCGGCAGGGCATCCAAAATGTCATGAACAACCAGATTGCAGTGTCTGCTCAATTACAGGCTATGCAGGCATGGGCACGTGAGCGTAATGTTGATCTATCACATCCTGCAAATGCTAACTTAATGGCGCAGCTCTTTCCTATGATGCAGTCGAGGATGGTTTCTCAACACAAAGCAAATGAGAGCAGCATTGGTGCTCAGTCATCACTTGTACCTGTTTCAAAGCAGCAGGTTACATCTCCAGCAGGTGCAAGTGATAGCTCAGCACATGCTAATTCATCAAGTGATGCATCTGGGCTGTCTGGTCCTGCAAAAGCCAGGCAAATTCCTTCCAACCATTTTGGTCCACCAACTAATGCTGTTACAGCTAGCCATTCCAGTGACACGGCAGTGCAGCAATTTAATAATCATGGCAGAGAGTCTCAAGCATCCATAAGGCAACCTGCTTTAGTTGGAAGTGGAATGCCTTCTGCACCACCCCAACAGTCTTCTACCAGCATGAGTTTGGGTTCAGATCATCATTTGAATGCAAAAAGTACTTTATCTGGTTCAGAACCTCCACAAATGCAGCATATAAGGAAGTTAAACCAATCATCTCCTCAGGCATCAGGTAGTACAAATGAAGGGAGCTCAGGAAATCATGTGAAATCCCGAGGGGCACCATCTCAGACGCCTCAACAACGACATGGATTTACCAAACAACAGCTGCATGTTCTTAAAGCACAAATACTGGCATTTAGGCGGCTCAAGAAAGGAGAGGGTAACCTTCCCCAAGAACTTCTTCAGTCTATTGTACCATCACCTCTTGAGCCGCAATTGCAGCAGCCAATCCATCCTTCCGGATGGCAGAATCAAGATAAGTCTGCTGGAAACATCATGCCAGAGCACTCAAGGCTCATAGAATCTGAAGCAAAGAACTTGCAAAATGTCCCTGTAGTTAGTGGACAGGGTTCTTCAAAGCAGGAAAATTTTGCAAGAAATGAGAAATCCACTGTCTCAGCAGTTCATATGCAAGCTAAACCTGTGGCGACAAAGGATCCTGCTCCCATGCTATCTTCTCAAGAGGAAGAGCAACAACCATTTGGTTGCTTTGTTAAGTCAGATCTGGAAAGTGAACGTGAAACTAACAGAAATCCTGTTAGGAATGAGTTGCCGTTAGACAGGGGAAAGGCTATTGCACCACAGCCTTCTGCTTCTGAGTCAATGCAAAATAAGAACCCTTCACAAACAAGCATGGTTGGGCAGCCAAAAGATATAGGATCTACAAGAAAATATCATGGACCTCTATTTGATTTCCCCTTCTTTACTAGGAAACATGACTCCTTTGGGTCATCGATGATGGTAAGCAGCAACAATAATTTGTTATTGGCATATGATGTCAGAGATCTTCTTGCTGAGGAAGGCACGGAAGTGCTTAGCAAGAAAAGGACAGAGAATTTAAAGAAGATTGAAGATCTACTAGCAAACAACTCAGAGAGGAAACTAATGAAGCCAGATCTTGTGTTGAGGTTACAAATTGAAGAGAAAAAACTTCATCTTAGAGGTCTTCAGGCACGTTTAAGGGATGAGGTTGATCAACAGCAACAAGAGATAATGGCAATGCCAGACAGGCAATATCGTAAGTTTGTTAGGCTCTGTGAGCGTCAGCGTATAGAACTGGCTAGGCAAGTGCAGGCATCACAGAGAGCTATAAGGGAGAAGCAACTCAAATCTATATTTCAGTGGCGTAAGAAGCTTCTTGAGGCACACTGGGCAATACGTGATGCTCGGACTGCTCGGAACAGGGGGGTGGCAAAATATCATGAGAGAATGTTAAGGGAATTTTCGAAACGTAAAGATGATGACAGGAATAAAAGGATGGAAGCCTTGAAAAATAATGATGTTGACAGATATAGGGAGATGTTGCTGGAGCAGCAGACTAGCATGGCGGGTGATGCTGCTGAGAGATACTCTGTTGTTTCAACTTTCTTAACGCAGACAGAAGAGTATCTTCATAAGCTGGGAAGTAAGGTAACGGCTGCCAAGAATCAACAGGAAGTAGAGGAGGCAGGAAAAGCTGCTGCTGCTGCTGCCCGGTTGCAGGGTCTTTCTGAAGAAGAAGTCAGAGCAGCAGCAGCTTGTGCTGGAGAAGAAGTGATGATTAGAAATCGTTTTATAGAGATGAATGCTCCTAAAGATGGTTCATCTGTCAGCAAATATTACAGCCTTGCTCATGCTGTGAATGAGAAGGTCATAAGGCAACCATCAATGTTGCGGGCTGGAACATTGAGAGATTATCAGCTTGTCGGCTTGCAATGGATGCTTTCTTTGTATAACAACAAGTTAAATGGAATTTTGGCAGATGAGATGGGTCTTGGCAAAACTGTGCAGGTTATGGCATTGATTGCCTATTTAATGGAATTCAAAGGAAATTATGGCCCACATCTCATAATAGTCCCGAATGCTGTTTTGGTTAACTGGAAGAGCGAGTTTTATAACTGGTTGCCATCTGTGTCATGCATTTTTTATGTTGGAGGGAAGGATCAACGATCAAAATTATTTTCTCAAGAGGTTTGTGCGTTGAAATTTAATGTCCTTGTGACAACTTATGAGTTCATCATGTATGACCGGTCAAAGCTTTCAAAAATTGATTGGAAGTATATCATAATTGATGAAGCACAAAGGATGAAAGATAGGGATTCAGTTCTAGCACGTGATCTTGATCGATATCGTTGTCAAAGACGCCTACTTTTGACTGGAACCCCCTTACAGAATGATTTGAAGGAGCTTTGGTCACTTTTAAACCTACTCCTTCCTGAGGTTTTTGACAATCGGAAAGCATTTCATGATTGGTTCTCAAAACCTTTTCAAAAGGAAGGCCTTGGTCAAAATGCAGAGGATGATTGGCTTGAGACAGAAAAGAAAGTTATAGTTATCCACCGACTTCATCAGATTCTTGAGCCCTTCATGCTTAGGCGTCGTGTTGAGGATGTAGAAGGCATGCTGCCAGCAAAGGTCTCTATAGTTTTGCGATGTAGAATGTCAGCTATCCAGAGTGCTATTTATGACTGGGTCAAATCCACTGGTACCCTTCGTCTTGATCCTGAGGATGAGAAACACAAGGTTCAAAAGAATCCAGTCTACCAGGCAAAGCAATATAAAACGTTAAATAACAGATGCATGGAGCTGCGTAAAACTTGCAATCATCCGTTGCTTAACTACCCATTCTTCAGTGACTTGTCCAAAGATTTTCTTGTAAAATCTTGTGGGAAACTGTGGATCTTGGATCGAATCCTTATAAAACTTCAAAGGACTGGACACCGAGTTCTGCTCTTTAGTACTATGACAAAACTCTTAGACATTTTAGAAGAGTACCTACAATGGCGACGGCTTGTGTACAGAAGAATTGATGGAACAACAAGTTTAGAAGATCGTGAATCAGCTATAGTGGATTTCAACAGTGCTGGTTCAGACTGTTTCATCTTCTTGCTTAGCATTCGGGCTGCTGGGCGAGGCCTTAACCTTCAGTCTGCTGACACAGTTGTCATATATGATCCTGACCCAAATCCCAAAAATGAGGAGCAGGCAGTTGCTAGAGCTCATCGCATTGGGCAGAAAAGAGAAGTCAAAGTTATCTACATGGAAGCTGTTGTAGACAAAATCTCCAGCTACCAAAAAGAGGATGAACTGAGAAGTGGAGGCACTGTTGATATGGAGGAAGAACTTGTAGGTAAGGATCGTTATATTGGATCCATTGAAAGCCTAATAAGGAACAATATTCAACAGTATAAGATTGATATGGCCGATGAGGTCATTAATGCTGGACGTTTTGACCAAAGAACAACACATGAAGAGAGACGCTTGACTTTGGAGACATTATTACATGATGAAGAGAGGTATCAGGAGACTCTCCATGATGTTCCCTCGCTACAGGAGGTAAATCGCATGATTGCTAGGAGTGAGGAGGAGCTTGAATTGTTTGATCAGATGGATGAGGAATTGGATTGGATTCAAGAGATGACAAGTTATGATCAGGTGCCTAAGTGGCTTCGAGTAAGTACAAGAGAAGTAAATGCCACTATTGCTGCTTTATCAAGAAGACCATCAAAGAATACTCTATTGGGTGGTGATGTTGGCGTGGAATCCAGTGAAATGGGATCTGAAAGGAGAAGGGGACGACCCAAGGGAAAGAAGAATCTTAATTATAAAGAGTTAGACGATGAAAATGAAGAATTCTCTGAAGCAAGTTCTGATGAAAGAAATGAATCTTCAGCCCATGAAGATGAAGGGGAGATTGGAGAATTTGAAGATGATGGACTGAGCGTGGCAGATGGAGCTCAACCCAATGGTAAGGATCAATTGGAAGATGGTCCAATTTGTGATGTTCGATATGAATTTCCTCCATCTACAACAGAGAATGTTAGAAACAATCTTACAGCCGAAGGATCTGGATCCCCAGGCACGTCCTCAGACAGTCAAAGGTTGACACAGACAGTATCTCCTTCAGTTTCCTCGCAGAAGTTTGGTTCCCTCTCTGCTTTGGATGCCAGGCCAAGTTCCCTTTCAAAAAGGATTACTGATGAGTTAGAGGAGGGAGAAATTGCTGTATCTGGTGATTCTCACATGGATAATCAACAATCTGGGAGTTGGATTCATGATCGTGATGAAGGTGAAGATGAACAAGTTTTGCAACCTAAGATTAAACGTAAACGTAGTCTTCGTGTTCGGCCTCGTCATGCCCTGGAGAGGCCTGAGGAAAAGTTTGGTGGTGAGGTGGGATCTCTTCACCGTGGAGAATCATCTCTTTTGTCTGTTCATGCAGACCATAGATATCAAGCGCAAGCAAGGACGGATCCTGAAGAAAAGTCATTTGGAGGATCCAATGCCAGCAGGCATGATCAGAATGAGTCATCCTTGAAAGTAAAGAGAAATTTACCTTCAAGGAGAGTAGCTACTGCCTCCAAATTTCAGGGCTCACCTAAGTCCAGTCGATTGAACTGCATTTCTACTTCTGAGGATGGTGGACACTCGAGAGAAAGTTGGGAGGGGAAGCCTATCAACTCTAGTGGGTCTTTGGCCTTATCCTCTAAAATGCCTGAAATCATCCAAAGAAGGTGCAAGAATGTAATTAGCAAGCTCCAAAGGAGAATAGACAAGGAAGGTCATCAAATTGTACCTTTGCTAAAAGATTTATGGAAGAGGGTTGAAAATTCTGGGTACACAGGTGGATCTGGGAATAGTCTGTTGGATTTGCGGAAGATTGACCAGCGAATCGATAGATTGGAGTATAGTGGTGTGATGGAGCTTGTGTTTGATGTGCAGTTCATGCTGAAGAATGCAATGCATTTTTATGGGTTTTCACACGAGGTAAGATCTGAAGCAAAGAAGGTTCATGATCTCTTTTTTGATATCTTGAAAATTGCTTTTCCTGATACGGATTTTCGAGAAGCAAGAAATGCACTTCCTTTCTCGGGTCAAATATCAGTCGGTGCTGTAACATCTCCCAGGCAAATGGCTGGTACCCAAACCAAGAGGCACAGGACGATAAGCGAGGTGGAAACTGATGCAAGCCCTTCACAGAAGCACCTGCAACGTGGATCTGCTTCAAGTGGGGAAAACACCAGGATCAGAGTTCACATTCCACAGAAGGAATCAAAATCTGGAAATGGAGGTGGCAACATCCGGGAACTTCAGCAGGATGATTCTCCACTGCTTACTCATCCAGGTGAACTGGTTGTATGCAAGAAGAGAAGAAATGACAGGGACAAATCATTGGTGAAGTCTAGGACTGGGTCAGTTGGCCCGGTCTCACCACCCAGTATGGTCCCTGCTGCAAGAAGTCCAAGGCTTGGTTCAGTCCCAAAGGATGCAAGACTGGCGATTGGCCAGCCATCTCAGCAACCTAATGGCCCTGGTGGGTCAGTTGGCTGGGCAAATCCGGTAAAGCGGTTAAGGTCAGATTCTGGGAAGAGAAGACCAAGTCATCTGTAG 6432 0.4361 MQLQQSRKFNELTQQGPSQEAQLKVQNIEQQMLNPVHQAYLQYALQAAQQKSALASQSQQQNKIGMLGSSSVKDQEMRMGNLKMQELMSMQAVNQAQGSTSRNVSEQFSHGERKIEQGQQLAPDLKSEGKPSTQGPAAAQLMPGNMIRPVQTPNARQGIQNVMNNQIAVSAQLQAMQAWARERNVDLSHPANANLMAQLFPMMQSRMVSQHKANESSIGAQSSLVPVSKQQVTSPAGASDSSAHANSSSDASGLSGPAKARQIPSNHFGPPTNAVTASHSSDTAVQQFNNHGRESQASIRQPALVGSGMPSAPPQQSSTSMSLGSDHHLNAKSTLSGSEPPQMQHIRKLNQSSPQASGSTNEGSSGNHVKSRGAPSQTPQQRHGFTKQQLHVLKAQILAFRRLKKGEGNLPQELLQSIVPSPLEPQLQQPIHPSGWQNQDKSAGNIMPEHSRLIESEAKNLQNVPVVSGQGSSKQENFARNEKSTVSAVHMQAKPVATKDPAPMLSSQEEEQQPFGCFVKSDLESERETNRNPVRNELPLDRGKAIAPQPSASESMQNKNPSQTSMVGQPKDIGSTRKYHGPLFDFPFFTRKHDSFGSSMMVSSNNNLLLAYDVRDLLAEEGTEVLSKKRTENLKKIEDLLANNSERKLMKPDLVLRLQIEEKKLHLRGLQARLRDEVDQQQQEIMAMPDRQYRKFVRLCERQRIELARQVQASQRAIREKQLKSIFQWRKKLLEAHWAIRDARTARNRGVAKYHERMLREFSKRKDDDRNKRMEALKNNDVDRYREMLLEQQTSMAGDAAERYSVVSTFLTQTEEYLHKLGSKVTAAKNQQEVEEAGKAAAAAARLQGLSEEEVRAAAACAGEEVMIRNRFIEMNAPKDGSSVSKYYSLAHAVNEKVIRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSEFYNWLPSVSCIFYVGGKDQRSKLFSQEVCALKFNVLVTTYEFIMYDRSKLSKIDWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSKPFQKEGLGQNAEDDWLETEKKVIVIHRLHQILEPFMLRRRVEDVEGMLPAKVSIVLRCRMSAIQSAIYDWVKSTGTLRLDPEDEKHKVQKNPVYQAKQYKTLNNRCMELRKTCNHPLLNYPFFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNSAGSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSYQKEDELRSGGTVDMEEELVGKDRYIGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETLHDVPSLQEVNRMIARSEEELELFDQMDEELDWIQEMTSYDQVPKWLRVSTREVNATIAALSRRPSKNTLLGGDVGVESSEMGSERRRGRPKGKKNLNYKELDDENEEFSEASSDERNESSAHEDEGEIGEFEDDGLSVADGAQPNGKDQLEDGPICDVRYEFPPSTTENVRNNLTAEGSGSPGTSSDSQRLTQTVSPSVSSQKFGSLSALDARPSSLSKRITDELEEGEIAVSGDSHMDNQQSGSWIHDRDEGEDEQVLQPKIKRKRSLRVRPRHALERPEEKFGGEVGSLHRGESSLLSVHADHRYQAQARTDPEEKSFGGSNASRHDQNESSLKVKRNLPSRRVATASKFQGSPKSSRLNCISTSEDGGHSRESWEGKPINSSGSLALSSKMPEIIQRRCKNVISKLQRRIDKEGHQIVPLLKDLWKRVENSGYTGGSGNSLLDLRKIDQRIDRLEYSGVMELVFDVQFMLKNAMHFYGFSHEVRSEAKKVHDLFFDILKIAFPDTDFREARNALPFSGQISVGAVTSPRQMAGTQTKRHRTISEVETDASPSQKHLQRGSASSGENTRIRVHIPQKESKSGNGGGNIRELQQDDSPLLTHPGELVVCKKRRNDRDKSLVKSRTGSVGPVSPPSMVPAARSPRLGSVPKDARLAIGQPSQQPNGPGGSVGWANPVKRLRSDSGKRRPSHL 2143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5082g00082 2143 Coils Coil 1549 1569 - -
Pral5082g00082 2143 PANTHER SNF2/RAD54 HELICASE FAMILY 616 1704 - -
Pral5082g00082 2143 MobiDBLite consensus disorder prediction 1 20 - -
Pral5082g00082 2143 SMART ultradead3 906 1095 IPR014001 -
Pral5082g00082 2143 MobiDBLite consensus disorder prediction 266 302 - -
Pral5082g00082 2143 MobiDBLite consensus disorder prediction 310 387 - -
Pral5082g00082 2143 Pfam QLQ 385 418 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pral5082g00082 2143 MobiDBLite consensus disorder prediction 1616 1666 - -
Pral5082g00082 2143 MobiDBLite consensus disorder prediction 550 568 - -
Pral5082g00082 2143 MobiDBLite consensus disorder prediction 1797 1821 - -
Pral5082g00082 2143 MobiDBLite consensus disorder prediction 207 387 - -
Pral5082g00082 2143 FunFam ATP-dependent helicase BRM 1150 1360 - -
Pral5082g00082 2143 MobiDBLite consensus disorder prediction 522 568 - -
Pral5082g00082 2143 Gene3D - 1150 1360 IPR027417 -
Pral5082g00082 2143 MobiDBLite consensus disorder prediction 2058 2074 - -
Pral5082g00082 2143 MobiDBLite consensus disorder prediction 96 140 - -
Pral5082g00082 2143 MobiDBLite consensus disorder prediction 1668 1684 - -
Pral5082g00082 2143 MobiDBLite consensus disorder prediction 522 538 - -
Pral5082g00082 2143 FunFam Brahma1 1844 1967 - -
Pral5082g00082 2143 CDD Bromodomain 1849 1952 - -
Pral5082g00082 2143 MobiDBLite consensus disorder prediction 1725 1740 - -
Pral5082g00082 2143 MobiDBLite consensus disorder prediction 2033 2047 - -
Pral5082g00082 2143 FunFam ATP-dependent helicase BRM 711 785 - -
Pral5082g00082 2143 CDD SF2_C_SNF 1236 1361 - -
Pral5082g00082 2143 SMART QLQ_2 383 420 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pral5082g00082 2143 SMART helicmild6 1267 1351 IPR001650 -
Pral5082g00082 2143 Gene3D - 712 785 - -
Pral5082g00082 2143 Coils Coil 1457 1477 - -
Pral5082g00082 2143 Gene3D - 901 1149 IPR038718 -
Pral5082g00082 2143 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 893 1140 IPR027417 -
Pral5082g00082 2143 MobiDBLite consensus disorder prediction 1979 2143 - -
Pral5082g00082 2143 FunFam ATP-dependent helicase BRM 901 1149 - -
Pral5082g00082 2143 SUPERFAMILY Bromodomain 1844 1955 IPR036427 GO:0005515
Pral5082g00082 2143 MobiDBLite consensus disorder prediction 1517 1741 - -
Pral5082g00082 2143 SMART bromo_6 1842 1957 IPR001487 GO:0005515
Pral5082g00082 2143 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1241 1418 IPR001650 -
Pral5082g00082 2143 ProSiteProfiles QLQ domain profile. 384 420 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pral5082g00082 2143 Pfam SNF2-related domain 913 1217 IPR000330 GO:0005524|GO:0140658
Pral5082g00082 2143 MobiDBLite consensus disorder prediction 1761 1835 - -
Pral5082g00082 2143 MobiDBLite consensus disorder prediction 207 255 - -
Pral5082g00082 2143 Pfam Helicase conserved C-terminal domain 1240 1351 IPR001650 -
Pral5082g00082 2143 MobiDBLite consensus disorder prediction 1695 1714 - -
Pral5082g00082 2143 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1144 1483 IPR027417 -
Pral5082g00082 2143 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 922 1087 IPR014001 -
Pral5082g00082 2143 Gene3D - 1841 1954 IPR036427 GO:0005515
Pral5082g00082 2143 MobiDBLite consensus disorder prediction 2000 2023 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5082g00082 Pral-Chr5082 475829 488519 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5082g00082 931 1392 RAD5 or RAD16-like Gene Family AT1G02670 26.404 3.84e-30 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral5082g00082 SNF2_N 2.2e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5082g00082 K11647 - gmx:100807104 3217.17