Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5082g00063 ATGGCCGGAGTGAGGTTTTCCTGTCTGAAACGTCTCCAGAAATTTTCAGCCAAGTGTTCTCTGAACTTGGAGTCAGTTCAACCAAATCACCATATTATGAACCTTGCAAGATGTGAAGATTGCGTTCATGTAAACTTTCCCACTAATTCAGTGAATCAAGCTTATTTCAAAGGAGAGTTACGGTTACCTGTAAATTTTGCTAAGAACCAGTTTAGAATTATGACTTCAGAAAACAGCAACCTCTTGAATACCAAACCCAGTGCTCCACTTTCTCCTAACTTCTCCAGTTTTAGCCTCCAAAACTCTCTTCCTTTTGCTTCAGTGAATCTCCTGTTGAATCATCGATCATATTCGTCATCTCTGAGTGGCGAAGGAAGTAGAGATGGAAGAACTGATTCTCCATATGATTATGGAGCAAGTGATTCTACAGATATCAGTCACTGGGCTCATGATCTGACTCCATGTGTTCAACAGTTGTTTGACTCACACCCATTCCTTAACGATGTGGTTATTCCAGTTGGTGTCACATTGACTGCCACTCTAATAGCGTGGACTTTGATGCCTCTGATTCTGAGGAAGTTTCACGAAAAAGCAATGCAAAGTTCTGCAACAATACTTCTGTCCGAGGAGCGACTTCCTTATGAGAAAAGCATCTGGGGTGCTTTGGAGGATCCATTGCGATATATGATTACCTTCGTGGCATTCTCACAGATTTCTTTAATTGTGGCTCCAACAAGTGAAGCCTCACACCACCTTGCAGAGGCTTGGAAGGAGGCAGTGATCTTTTTATTTACGTGGTTTCTGCATAGATGGAAAACAAGTATCTTGGGACACATTTCGTCCCGTCAAAGTTTAGTTGGCCATGGTCAACATAAATTGCTTACTCTGCACAGAGTCTCATCCGCTGGTATATTTGGGATTGGTACAATGGCTTTGGCCGAGGCTTGCGGGATCTCTGTTCAATCTATTGTAATTGTTGGCGGTATAGGAGGATTTGCCACTGCTTTTGCCGGCAGAGACGTCCTTGCCAATGTATTCAGTGGATTGTCTATGCAGTCTTCGGAGCCTTTTACAATTGGAGATACAATTAAAGCAGGGTGGGTAGAAGGAGAAGTGATAGAAATAGGACTGACAGAAACATTGTTGGTGAATGCTGAGAAGATGGCTGTGATGGTGCCCAACTCATATTTTTGCAGGCAGGTGATAGTGATAAAGTCTCGAGCAGAATGCCGTGGCATGATATCTAAAATCCCTTTGAAGATTGAGGCCATACAAAGAATTCCCAAGATATCAGATGAGATAAAAAACATGCTCAGAACAAATGGTAAGGTTTTGCTGGGGAAAGGAGCCCCTTACTGTTACTTGTCGCGCATTGAAACTTCGTACGCAGAATTGACCCTTGGATACAACCTCAAACACATGGGCAAAGATGAGATGAGCTATGCAGAACAAGAGGTCGTGGAGGAGGCAGTGGAGATTTTAAAGAGGCATCGTGCTGATCTTGGCCTCCTTTCCCATCTCTCATCTTCTTCCTCTGATTCAGACTGA 1548 0.4328 MAGVRFSCLKRLQKFSAKCSLNLESVQPNHHIMNLARCEDCVHVNFPTNSVNQAYFKGELRLPVNFAKNQFRIMTSENSNLLNTKPSAPLSPNFSSFSLQNSLPFASVNLLLNHRSYSSSLSGEGSRDGRTDSPYDYGASDSTDISHWAHDLTPCVQQLFDSHPFLNDVVIPVGVTLTATLIAWTLMPLILRKFHEKAMQSSATILLSEERLPYEKSIWGALEDPLRYMITFVAFSQISLIVAPTSEASHHLAEAWKEAVIFLFTWFLHRWKTSILGHISSRQSLVGHGQHKLLTLHRVSSAGIFGIGTMALAEACGISVQSIVIVGGIGGFATAFAGRDVLANVFSGLSMQSSEPFTIGDTIKAGWVEGEVIEIGLTETLLVNAEKMAVMVPNSYFCRQVIVIKSRAECRGMISKIPLKIEAIQRIPKISDEIKNMLRTNGKVLLGKGAPYCYLSRIETSYAELTLGYNLKHMGKDEMSYAEQEVVEEAVEILKRHRADLGLLSHLSSSSSDSD 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5082g00063 515 Gene3D - 356 403 IPR023408 -
Pral5082g00063 515 Pfam Mechanosensitive ion channel 300 499 IPR006685 GO:0016020|GO:0055085
Pral5082g00063 515 Gene3D - 256 353 - -
Pral5082g00063 515 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 151 504 - -
Pral5082g00063 515 SUPERFAMILY Sm-like ribonucleoproteins 340 402 IPR010920 -
Pral5082g00063 515 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 256 337 IPR011014 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5082g00063 Pral-Chr5082 414356 418424 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5082g00063 139 502 Mechanosensitive Ion Channel Family AT4G00290 57.766 1.70e-150 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5082g00063 K22047 - gmx:100789047 479.944