Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5082g00062 ATGGCCGGAGCAAGGTTTTCCTATCTGAAACGTCTCCAGAAATATTCAGCTAAGGGTTCTTTTAACGAGGAATTAAGTCAGCCAAATCAACGTATTATGAACCTTACAAGATGTGTGGATTGTGTTCGGTTAAGATTTCTGAGTACTTCGTATAGTCACGCTTATTCCAAAAGAGAGTTACGGTTACCTGAAATTTTTGCCGAGAACCAGTTTAGAACTATGACTGCTGGAAATAGCAACCTCTTCACTACCAAACCTGCGGCTTCTATTTCTCCTAAATTTTCTAGCTTTTTCTTCCACAAGGCTCTTCCTTTTGCTTCACCTTCAATGACGCTCTTGTTGAATCATCGATCATATTCGTCATCTCTGAGTGGCAAAGGAAGTGGAGATGGGACCACGGATTTTCCATCTATTTCTGGGGCAAATGCCACGAATGCCGGCGGTGATTCTATCGATACGAGTGATTGGGCTGATAAAATCAAAGATGCTTGGCAGAGTGCAGCAGAGGCAGTAGCATATTCTGCACAAAAGGTTAAAGAAGCCTCTGATGAGCTGACTCCATATGCTCAACAGTTGCTCGACTCGCATCCATACCTCAATGATGTGGTTATTCCAGTTGGTGGTACATTGATTGCCACACTTATAGCGTGGATTGTGATGCCTCGGATTTTGAGGAAACTTCACAAATATGCAACGCAAGGTCCTGCTGCAAAATTTCCTGGAAGCACATCTGAGGAGCAAGTTCCCTATGAGAAAAGCTTTTGGGGTGCTTTGGAGGATCCAGTGCGATATTTGGTTACCTTCATGGCATTCTCACAGATTGGTGTTGTGGTAGCTCCAACAACTGTGGCCTCACAATACCTTGCACAGGCTTGGAGGGGTGCTGTGATCCTTTCATTTGTGTGGTTTTTGTATCGATGTAAAACGAATGTCTTGGCACGTATTTTGTCAGGTCAAAATTTACTGGGGCTTGATCGGGATAAACTGCTCGGTCTAGACAAAATATCATCTGTTGGTCTCTTTGTGATTGGTATAATGGCTTTAGCTGAGGCTTTTGGTGTGGCTGTGCAATCTATTATAACTGTTGGTGGTATAGGAGGAGTTGCCACTGCTTTTGCCGCTAGAGACATACTTGGCAATGTGTTCAGTGGGTTGTCTATGCAATTTTCAAAGCCCTTTACCGTTGGAGACACAATAAAAGCTGGCTCGGTGGAGGGTCAGGTGGTGGAAATGGGACTTACTACTACGTCATTGCTGAATGCTGAGAAGTTCCCAGTGGTAGTGCCAAACTCACTTTTTTCTAGCCAGGTAATAGTGAACAAGTCCCGTGCTGAATGTCGTGCCATCTTGTCCAAAATTCCTTTGCGAATTGAGGATATAAATAAAATTCCAAAGATAGCAGATGACATCAAGAGCATGTTAAGGACAAACGCTAAGGTTTTCTTAGAGAAAGACGCTCCCTACTGTTACTTGTCGCACATTGAAAGTTCATATGCACAATTGACTATTGGATACAACCTCAAATACATGCGTAAAGACGAGATGTACTCTGCAGAACAAGATATCCTCTTGCAGGCAGTCCAGATTATTAAGATGCATGGTGCTGAACTTGGCAATACCTGGCAAAGCGTGCCTTGA 1638 0.4347 MAGARFSYLKRLQKYSAKGSFNEELSQPNQRIMNLTRCVDCVRLRFLSTSYSHAYSKRELRLPEIFAENQFRTMTAGNSNLFTTKPAASISPKFSSFFFHKALPFASPSMTLLLNHRSYSSSLSGKGSGDGTTDFPSISGANATNAGGDSIDTSDWADKIKDAWQSAAEAVAYSAQKVKEASDELTPYAQQLLDSHPYLNDVVIPVGGTLIATLIAWIVMPRILRKLHKYATQGPAAKFPGSTSEEQVPYEKSFWGALEDPVRYLVTFMAFSQIGVVVAPTTVASQYLAQAWRGAVILSFVWFLYRCKTNVLARILSGQNLLGLDRDKLLGLDKISSVGLFVIGIMALAEAFGVAVQSIITVGGIGGVATAFAARDILGNVFSGLSMQFSKPFTVGDTIKAGSVEGQVVEMGLTTTSLLNAEKFPVVVPNSLFSSQVIVNKSRAECRAILSKIPLRIEDINKIPKIADDIKSMLRTNAKVFLEKDAPYCYLSHIESSYAQLTIGYNLKYMRKDEMYSAEQDILLQAVQIIKMHGAELGNTWQSVP 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5082g00062 545 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 156 540 - -
Pral5082g00062 545 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 289 375 IPR011014 GO:0016020
Pral5082g00062 545 SUPERFAMILY Sm-like ribonucleoproteins 376 441 IPR010920 -
Pral5082g00062 545 Gene3D - 392 440 IPR023408 -
Pral5082g00062 545 Gene3D - 287 391 - -
Pral5082g00062 545 Pfam Mechanosensitive ion channel 334 536 IPR006685 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5082g00062 Pral-Chr5082 410982 424775 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5082g00062 72 543 Mechanosensitive Ion Channel Family AT4G00290 59.958 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5082g00062 K22047 - gmx:100789047 689.878