Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5082g00061 ATGAACCTCGCAAGAACTGTTGATTGCATTCATGCAATAATTCCGGGTAATCCATCCAGTCAAGCCTATTCCAAAGGAGAGTTACAGTTGCCTGAAATTTTTTCCAAGAACCAGGGTAGAACTTTGGCTTCTGAAAACATCACCCTCTTCAATACCAAACCCAATGCCTCTCTTTCCCCTAAATTTCCCTGTTTCATTTGTTTCCATCATTCGTATTCACCATCTTTGAGGGACAAAAGAGGTAGGGATGGGAACACTAATTTTCCATTTGATAAAATCAAAGATGTTTGGAAGAATGCGGTAGAGAAAGTGACTCATTGTGCAGAAAAGGTTGAAGAAGCCTCCGATGAGTTTAGTCTATATGTTCAACAGTTTCTCGACTCACATCCATATCTTTATAACATGGTTATTCCAGTAGGTGGTACACTGGCAGCCGCTATAATAGCATGGATTGTGATGCCTCGGATTTTAAGGAAACTCCACAGATATTCAAAGCGAAGTCCTGCTGCAATACTTCTGGAGGGAAGCATATCTGGGGAACGAGTTCCTTATGAGAAAAGCTTTTGGGGTGCTTTGGAGGATCCAGTGCGATATTTGGTTACCTTCATGGCATTCTGGCAGATTTGTGTAATGGTAGCTCCAACAACTTTAGCCTCGCACCTTGGACAGGCTTGGAGGGGTGCGGTGATCCTTTCATTTGTGTGGTTTTTGCATCAATGGAAAACAAATACGTTAGGACACATTGCGTCTGGTCAAAGTTTTCTTGGGCTTGGTCAAGATAAATTGCTTGCCCTAGACAAAGTCTCATCTGTTGGTCTATTTGTGATTGGCATAATGGCTTTGGCTGAGGCTTGCGGTGTTGCTGTACAATCTATTGTAACTGTTGGTGGTATTGGAGGAGTTGCCACCGCTTTTGCTACCAGGGACATCCTTGGCAATGTATTTAGTGGGCTGTCTATGCAGTTTTCAGAGCCCTTTACAGTTGGAGATAAAATAAAAGCTGGCACGGTAGAGGGTGAAGTGGTGGAAATGGGACTTACAACTACATCATTGCTGAATGCTGACAAGTTCCCCGTTGTAGTGCCAAACTCACTTTTTTCCAGCCAGGTGATAGTGAATATGTCCCGTGCTGAATATTGCGCCATCACATCTAAAATTCCTCTGGGGATTGGTGATTTCAGTATAATTCCCAGGATATCAGATGATATAAAGAGCATGCTAAAAACAAAGGAAGTGGTTTTCTTAGGAAAAGAGGCCCCTTACTGTTATCTGTCACGCATTGAATGTTCATTTGCACAATTGACTATTGGATACAACATCAAGTACATGAGATGA 1335 0.424 MNLARTVDCIHAIIPGNPSSQAYSKGELQLPEIFSKNQGRTLASENITLFNTKPNASLSPKFPCFICFHHSYSPSLRDKRGRDGNTNFPFDKIKDVWKNAVEKVTHCAEKVEEASDEFSLYVQQFLDSHPYLYNMVIPVGGTLAAAIIAWIVMPRILRKLHRYSKRSPAAILLEGSISGERVPYEKSFWGALEDPVRYLVTFMAFWQICVMVAPTTLASHLGQAWRGAVILSFVWFLHQWKTNTLGHIASGQSFLGLGQDKLLALDKVSSVGLFVIGIMALAEACGVAVQSIVTVGGIGGVATAFATRDILGNVFSGLSMQFSEPFTVGDKIKAGTVEGEVVEMGLTTTSLLNADKFPVVVPNSLFSSQVIVNMSRAEYCAITSKIPLGIGDFSIIPRISDDIKSMLKTKEVVFLGKEAPYCYLSRIECSFAQLTIGYNIKYMR 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5082g00061 444 Gene3D - 223 323 - -
Pral5082g00061 444 Gene3D - 325 373 IPR023408 -
Pral5082g00061 444 Pfam Mechanosensitive ion channel 267 413 IPR006685 GO:0016020|GO:0055085
Pral5082g00061 444 SUPERFAMILY Sm-like ribonucleoproteins 309 375 IPR010920 -
Pral5082g00061 444 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 225 307 IPR011014 GO:0016020
Pral5082g00061 444 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 91 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5082g00061 Pral-Chr5082 410780 413318 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5082g00061 91 443 Mechanosensitive Ion Channel Family AT4G00290 64.972 3.51e-164 470
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5082g00061 K22047 - gmx:100814954 504.597