Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5082g00020 ATGAGGGGAACCAAATTATCTGAGCAGAAAATTATCACAAGCAAGCTTGTGAGAAATCCGTGCTTTCCGGGCGTGACACCCAGAGTTGTTCGGATTTCCGTGGCTGACGACTATGCTACTGATTCTTCCAGCGATGAAGACGAGAGAGAAGGACGTTTTTCTCGCACGGTGAAGAAGTTCGTCCATGAGATCAGAATGGAAGATTTCTCCAGTTTCATATCTCACAGGGAAGTTAACGGTGATTCCAGGTCCATTTTGAAGCAGAAGAACAGGGAAAGGCGACCTGCAATGGCCAGAAGTAAACAGAGCCTCCCCAACGGGAAGAAGTTTCGCGGCGTCCGGCAGCGGCTGTGGGGGCGCTGGGCGGCGGAGATCCGAGACCCGTTTTTGCGAGCTCGGAAGTGGCTCGGCACTTTTGACACGGCGGAGGAAGCGGCTTTGGTGTACGACATAGAAGCCATTCGTCTTAGAGGAGCCGATGCTCTGACTAATTTAATTAAGCCGCCAGAGAAACATCAACCTATAGTGCTTCCATTAAGCAATCACGAATCCCAAGGACCAGTGAGAAGTCCTCTGAAGAAGAAGAGCAAGTCGTGGGAAAATGAGTGTGTCTACGATTCAAGCAAAGAGTCTCGCGATTTATTATCGTCTTCGTCTTCCTCGCCGACTTCGGTTCTTAGATACAGTGGGGGAGGGTCCTGTGACCCAGCAGGATGGGCCGGCATCGAGGAATCCAGAGAAGAAGAAGAAAAGTTCTTTTTCCCAGATTCATCATCAGAATTTGCATCCAGTTGTTACTCGGACTACGAAACCCCTCTTAGTCCCCTGTTGTTTCTTGAATCCGGTGCGCCTCAACTGATATCTAGCGAGATTTTAAGGGACATTCCATTTCAACTTGATGATGATTTTGAATCTTCCAAGTGGGTCGTTGATAATTACTTTCAGGATCCTTTGCCTCTGAAATGA 966 0.4855 MRGTKLSEQKIITSKLVRNPCFPGVTPRVVRISVADDYATDSSSDEDEREGRFSRTVKKFVHEIRMEDFSSFISHREVNGDSRSILKQKNRERRPAMARSKQSLPNGKKFRGVRQRLWGRWAAEIRDPFLRARKWLGTFDTAEEAALVYDIEAIRLRGADALTNLIKPPEKHQPIVLPLSNHESQGPVRSPLKKKSKSWENECVYDSSKESRDLLSSSSSSPTSVLRYSGGGSCDPAGWAGIEESREEEEKFFFPDSSSEFASSCYSDYETPLSPLLFLESGAPQLISSEILRDIPFQLDDDFESSKWVVDNYFQDPLPLK 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5082g00020 321 SUPERFAMILY DNA-binding domain 109 165 IPR016177 GO:0003677
Pral5082g00020 321 MobiDBLite consensus disorder prediction 173 195 - -
Pral5082g00020 321 SMART rav1_2 109 172 IPR001471 GO:0003700|GO:0006355
Pral5082g00020 321 PRINTS Ethylene responsive element binding protein signature 132 148 IPR001471 GO:0003700|GO:0006355
Pral5082g00020 321 PRINTS Ethylene responsive element binding protein signature 110 121 IPR001471 GO:0003700|GO:0006355
Pral5082g00020 321 Gene3D AP2/ERF domain 108 166 IPR036955 GO:0003700|GO:0006355
Pral5082g00020 321 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 26 230 - -
Pral5082g00020 321 Pfam AP2 domain 109 158 IPR001471 GO:0003700|GO:0006355
Pral5082g00020 321 CDD AP2 108 164 IPR001471 GO:0003700|GO:0006355
Pral5082g00020 321 FunFam Ethylene-responsive transcription factor 2 108 167 - -
Pral5082g00020 321 ProSiteProfiles AP2/ERF domain profile. 109 166 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5082g00020 Pral-Chr5082 141377 142342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5082g00020 1 318 AP2-EREBP Transcription Factor Family AT2G46310 35.976 2.10e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral5082g00020 AP2 4.9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5082g00020 - - pcin:129289381 498.434