Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5082g00004 ATGGCCAAAGGCCACAAAAAGACTAGTAGCTCTTATTCTGAAGAGGTGAGCAGCATTGAATGGGAGTTCATTAACATGACAGAGCAAGAAGAAGATCTAATTCACAGAATGCACAGACTTGTTGGAGACAGGTGGGGCCTGATAGCAGGGAGAATTCCAGGAAGAAAAGCTGAGGAGATCGAAAGGTTTTGGATGATGACGCACGGACAAGTGTTTGCCAGCAAGAGAGGACAACTCAATAGACAACGAAGCTCTTAA 258 0.4496 MAKGHKKTSSSYSEEVSSIEWEFINMTEQEEDLIHRMHRLVGDRWGLIAGRIPGRKAEEIERFWMMTHGQVFASKRGQLNRQRSS 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5082g00004 85 SMART sant 22 70 IPR001005 -
Pral5082g00004 85 Gene3D - 26 67 - -
Pral5082g00004 85 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 25 68 - -
Pral5082g00004 85 SUPERFAMILY Homeodomain-like 27 65 IPR009057 -
Pral5082g00004 85 CDD SANT 25 66 IPR001005 -
Pral5082g00004 85 FunFam MYB-like transcription factor 25 67 - -
Pral5082g00004 85 Pfam Myb-like DNA-binding domain 26 65 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5082g00004 Pral-Chr5082 40540 42446 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5082g00004 25 64 MYB Transcription Factor Family AT5G14750 57.500 7.09e-14 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pral5082g00004 Myb_DNA-binding 1.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5082g00004 K09422 - qsu:112022944 130.568