Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral5081g00016 | ATGGCTGATTCTGGTGACCTGCCGAAATCTGCTGACAATCAACCGTCCGAGCAAGTGTGTAATTTCTTCAAGAAACCGGTTAATAGGAAGAATTTAAGAAAACGTACTGTTGATGAAGAAGATAACGAGGAGGATTCAACCAATGAAAGCTCTTTGTTACTCAGTCAGAAAAAACAGGTGAAGCCTGATAATAAGTTGTACTTTTCCACTGGTCCCTCAAAAAGCACTGCATCTAAAGCACAAGAGGAGCCTGAGAAGCAACTGTTCCATTTCGAGTCTTCAAAAGAGATTCAAGTTCAACATGATAACAAAGCAACAGCTATTCTTGAGACTGAAACCGAGTTTTCAAAAGATGCTCGAGCTATTCGTGAAAGGGCCCTTAAGCAAGCAGAGGAGAGTTTGAAGGGTAAAGCCACTAGTTCTGGAGAAGAAAAATTGTACAAGGGCATCAATAGTTACAAAGATTACAAGGCTGGCTTCCGTCGAGAGCAAACAATTTCTAGTGAAAAAGCTGGTGGGGCACATGGTCCTCTCAGGGCATCAGCTCATATAAGAGTTTCAGCAAGATTTGATTATCAGCCAGACATATGTAAGGATTATAAGGAGACTGGTTACTGTGGGTATGGTGATTCGTGTAAGTTTATGCATGATCGAGGAGATTACAAGTCTGGGTGGCAGTTGGAGAAGGAATGGGAGGAAGCTGAGAAAGCTAGGAGAATGAGATTGGCTGCGGGAGAGGATTCAGATGAGGAGGGTGCTAATTTGAGTGATGAAGATGATGATGATTCATTACCATTTGCATGTTTCATTTGTAGAAAGCCCTTTGTGGATCCTGTTGTAACAAACTGCAAGCACTACTTCTGCGAGCATTGTGCGTTGAAGCATCATGCAAAGAATAAGAAATGTTTCGTGTGCAACAAGCCTACTCTTGGCATTTTTAATGCAGCTCATGAGATACGCAAGAAGATGGCTGCAGAGGGTAAATGA | 987 | 0.4225 | MADSGDLPKSADNQPSEQVCNFFKKPVNRKNLRKRTVDEEDNEEDSTNESSLLLSQKKQVKPDNKLYFSTGPSKSTASKAQEEPEKQLFHFESSKEIQVQHDNKATAILETETEFSKDARAIRERALKQAEESLKGKATSSGEEKLYKGINSYKDYKAGFRREQTISSEKAGGAHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKEWEEAEKARRMRLAAGEDSDEEGANLSDEDDDDSLPFACFICRKPFVDPVVTNCKHYFCEHCALKHHAKNKKCFVCNKPTLGIFNAAHEIRKKMAAEGK | 328 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral5081g00016 | 328 | SUPERFAMILY | RING/U-box | 267 | 310 | - | - | |
| Pral5081g00016 | 328 | Pfam | Zinc finger, C3HC4 type (RING finger) | 267 | 309 | - | - | |
| Pral5081g00016 | 328 | MobiDBLite | consensus disorder prediction | 1 | 86 | - | - | |
| Pral5081g00016 | 328 | FunFam | Zinc finger CCCH domain-containing protein 1 | 189 | 223 | - | - | |
| Pral5081g00016 | 328 | ProSiteProfiles | Zinc finger RING-type profile. | 268 | 306 | IPR001841 | - | |
| Pral5081g00016 | 328 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 192 | 217 | IPR000571 | GO:0046872 | |
| Pral5081g00016 | 328 | SUPERFAMILY | CCCH zinc finger | 190 | 222 | IPR036855 | GO:0046872 | |
| Pral5081g00016 | 328 | MobiDBLite | consensus disorder prediction | 48 | 78 | - | - | |
| Pral5081g00016 | 328 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 266 | 325 | IPR013083 | - | |
| Pral5081g00016 | 328 | FunFam | RING finger protein 113A | 266 | 325 | - | - | |
| Pral5081g00016 | 328 | ProSitePatterns | Zinc finger RING-type signature. | 283 | 292 | IPR017907 | - | |
| Pral5081g00016 | 328 | CDD | RING-HC_RNF113A_B | 264 | 314 | - | - | |
| Pral5081g00016 | 328 | MobiDBLite | consensus disorder prediction | 240 | 259 | - | - | |
| Pral5081g00016 | 328 | SMART | ring_2 | 268 | 305 | IPR001841 | - | |
| Pral5081g00016 | 328 | SMART | c3hfinal6 | 191 | 218 | IPR000571 | GO:0046872 | |
| Pral5081g00016 | 328 | ProSiteProfiles | Zinc finger C3H1-type profile. | 191 | 219 | IPR000571 | GO:0046872 | |
| Pral5081g00016 | 328 | Gene3D | - | 189 | 223 | - | - | |
| Pral5081g00016 | 328 | PANTHER | ZINC FINGER PROTEIN 183 | 16 | 326 | IPR039971 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral5081g00016 | 1 | 326 | C2H2 Transcription Factor Family | AT1G01350 | 66.964 | 9.79e-169 | 471 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C3H | Pral5081g00016 | zf-C3HC4_3 | 1.7e-08 | CL0229 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral5081g00016 | K13127 | - | gmx:100787434 | 553.518 |