Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5081g00008 ATGATGGATGCCAAGGGACAAAAAATTGTGAGGTTTAAGGACTGGAGTTCAGAATCACCTTCCAGTGCGGAGATAACAAATTCTGCTGATGCTGGATATCGTCAGAGAAAAGTTGGACCAAGAGTGAGAGCTGTGTTTAAGAATATTAGAAGAAGAATCCAGAGAAGGTTTGAGAAAATTAGAACCTTGAGAAAACCTATAAATTTGCATCCAATAGGTGATGCAGCGACCAAGAAATCAGCTTCGAAGAGGAAGATTCTTGATCCACAGGGGTCTTTCCTTCAGAAATGGAACAAAATATTTGTGATCACATGTGTACTGGCAGTATCAGTGGATCCTCTGTTCTTTTACGCCCCAGTTATTAATAACGACAAAAAATGCCTTGCTATGAATGGACCTTTGCAGATCATTGCCAGTGCTCTTCGTACATTCTTTGACCTTTTCTACATTCTCCACATAACATTTCAGTTTCAAACGGGCTTTATCGCCCCTCCTTCTCGAGTATTCGGTAGGGGTGAGCTCGTTGATGATCCTCAGGCTATTGCAAAAAGATACTTATCTTCATACTTCATCATTGACATCCTGTCAATTATTCCACTTCCACAGGCGGTTGTTTTAGCCATGAGACATTCAGCTCCATCTGTAGAAAAGGACTGGTTAGAATACGCAATATTAATCCAATATGTCCCCAGATTTCTTCGGATCTATCCATTATTCACAGAAGTTACTAGAACTTCTGGCATACTGACTGAGACAGCATGGGCCGGCGCTGCTTATAATCTCTTTCTCTATATGCTAGCGAGTCATGTGGTTGGAGCTTTCTGGTACCTGTTTTCAGTAGAATCAGAGCTTCGGTGCTGGCACAAAGAATTGAAGAATGCTAATTTGACTACATACATGGGCTGTGAAAACCGGAATCCAAATGTCATAACACGTCTCAATAATTCTTGTAACTTCACGGATCCTGACAAAATTTACGACCCCAGAGTCTTCAATTTTGGAATATTTACCGACGCTTTACAATCTCGTGTGGTGGAATCAACAATGGATTTTCCTCAAAAGATCTTCTTCTGCTTTTGGTGGGGTTTGCGCAATGTAAGTTCTCTGGGACAAAATCTCAAGACAAGTACATATGTCCGGGAGATCATCTTTGCTTGCTTCATCGCAGTCTTTGGGTTGGTTTTGTTCTCATTGCTCATTGGAAACATGCAGAAATATCTACAATCTGTGACTGTTAGAGTTGAAGAAATGAGAATCAAGAGGCGGGACGCAGAGCGGTGGATGTCCCACCGTATGCTACCTGAGCACTTGAGGGAAAGAATCAGGCGGTATGAGCATTACAAATGGCAAGAAAACAGGGGAGTGGATGAGGAAACATTAATCCAAAATCTTCCTAAAGATCTCAGAAGAGACATAAAGCGTCACCTTTGCTTGGATTTACTTAAGAAAGTGCCAATGTTTGAGAAAATGGATGAGCAGTTGTTGGATGCACTTTGTGATAGGCTGAAGCCAGTACTGTATACAGAAAAGAGCGCCATTATTCGCGAAGGAGATCCAGTGGATCAAATGCTATTCATTATGCGAGGAAACCTGGCAACTATGACGACAAATGGTGGAAGAACTGGTTTTTTCAATTCTTTCGTTATTAAGGCAGGTGACTTCTGTGGAGAGGAGCTTTTAACATGGGCCTTGGACCCCAACTCATCCTCAAATCTTCCCATTTCAACCAGAACAGTAGAATCTTTATCAGAAGTTGAAGCCTTCGCTCTCATGGCTAATGACTTGAAGCTCGTTGCTTCCCAATTTCGACGCCTTCACAACAAACACATCCAGCACACTTTCAGGTACTATTCCCTGCAATGGAGGACATGGGCGGCCTGTTTCATACAAGTAGCTTGGCGTCGCCACTGTAAAAGGAAGATTGAGAAATCTTTACGTGAAGCAGAAAACAGGCTACAAGATGCTTTGGCGAAAGAGGAAGGTTCTTCTGTAAGTTTCGGTGCCACCATATATGCATCAAGGTTTGCTGCCAATGCCTTACGCAGGCTGCGAAAGAAGGGGGAACGAAACAACAGAATGCCTCAGAGATTGCTTCCTCTGCTGCCTCAGAAGCCAACTGAGCCTGATTTCACCGCGCAATCTTTAGGAGAATCTTAG 2157 0.4284 MMDAKGQKIVRFKDWSSESPSSAEITNSADAGYRQRKVGPRVRAVFKNIRRRIQRRFEKIRTLRKPINLHPIGDAATKKSASKRKILDPQGSFLQKWNKIFVITCVLAVSVDPLFFYAPVINNDKKCLAMNGPLQIIASALRTFFDLFYILHITFQFQTGFIAPPSRVFGRGELVDDPQAIAKRYLSSYFIIDILSIIPLPQAVVLAMRHSAPSVEKDWLEYAILIQYVPRFLRIYPLFTEVTRTSGILTETAWAGAAYNLFLYMLASHVVGAFWYLFSVESELRCWHKELKNANLTTYMGCENRNPNVITRLNNSCNFTDPDKIYDPRVFNFGIFTDALQSRVVESTMDFPQKIFFCFWWGLRNVSSLGQNLKTSTYVREIIFACFIAVFGLVLFSLLIGNMQKYLQSVTVRVEEMRIKRRDAERWMSHRMLPEHLRERIRRYEHYKWQENRGVDEETLIQNLPKDLRRDIKRHLCLDLLKKVPMFEKMDEQLLDALCDRLKPVLYTEKSAIIREGDPVDQMLFIMRGNLATMTTNGGRTGFFNSFVIKAGDFCGEELLTWALDPNSSSNLPISTRTVESLSEVEAFALMANDLKLVASQFRRLHNKHIQHTFRYYSLQWRTWAACFIQVAWRRHCKRKIEKSLREAENRLQDALAKEEGSSVSFGATIYASRFAANALRRLRKKGERNNRMPQRLLPLLPQKPTEPDFTAQSLGES 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5081g00008 718 SMART cnmp_10 486 617 IPR000595 -
Pral5081g00008 718 FunFam Cyclic nucleotide-gated ion channel 1 413 477 - -
Pral5081g00008 718 MobiDBLite consensus disorder prediction 685 718 - -
Pral5081g00008 718 Pfam Ion transport protein 97 414 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pral5081g00008 718 Coils Coil 638 658 - -
Pral5081g00008 718 CDD CAP_ED 486 617 IPR000595 -
Pral5081g00008 718 Gene3D - 99 412 - -
Pral5081g00008 718 FunFam Cyclic nucleotide-gated ion channel 1 484 602 - -
Pral5081g00008 718 Gene3D Jelly Rolls 484 604 IPR014710 -
Pral5081g00008 718 SUPERFAMILY cAMP-binding domain-like 415 611 IPR018490 -
Pral5081g00008 718 ProSiteProfiles cAMP/cGMP binding motif profile. 486 570 IPR000595 -
Pral5081g00008 718 Gene3D Helix hairpin bin 413 477 - -
Pral5081g00008 718 SUPERFAMILY Voltage-gated potassium channels 88 408 - -
Pral5081g00008 718 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 78 710 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5081g00008 Pral-Chr5081 67881 72885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5081g00008 2 712 Ion Channels AT5G53130 63.812 0.0 921
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5081g00008 K05391 - qsa:O6P43_017768 1049.27