Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5080g00008 ATGGAATCTGAAACTCGACAGAAAATTGAGGAAACGGTGCTGGATATACTGAAGAATGCCAACATTGATGAAGCGACTGAGTTCACAATCCGACTCGCGGCCTCGGAGCGGCTCGGGATGGATCTTTCTGACTTGGAACACAAGCTGCTTGTGAGAGGAATTGTAGAGTCGTATCTGCTCGCTATCGCCGAGGAAGAAGGTGGAAGGTTCCCCGCATCTGAGCTGAGTGCTCCACAAGAGACTAGAGAGGTGATGCAGTATGAGCAAGAGGCGAAGCCAAACAAGGAGGTTTTGGGGGACTCGGAGCGCATAATTTGCCAGCTATCAAACAAAAGGAATGTGGTGGTTCATGATTTCAGAGGGAAAAAGTTAGTCTCAATCAGGGACTTTTATCAAAAAGATGGAAAACAGCTTCCTTCAGCTAAAGGGATAAGTTTGCCGACTGAGCAATGGTCTGCATTCAAGAAAAGTGTCCCTGCTATAGAGGAGGCTATTACAAAGATGGAAGCAAAGTTGAGACCCGACGTTCATCATAAGCAAAATGGAGATGTGCTGAACCCAATTCATGGTAAGCAAAATGGAGATGTGCTGAACCCAATTCATGGTAAGCAAAATGAAGATGTGCTGAACCCAATGCATGGTAAGCAAAATGAAGATGAGCTGAACCCAATTCATGATAAGCAAAATGAAGATGTGCTGAACCCAATTCTTGATGCTGCTCCTCCTGAATCTGTCCCTATTGAAATCAGCCGTTTTGATGGGAAAAATTACCATTTCTGGGTTCAGCAGATGGAATCACTCTTGAAGCAACTAAAGATTGCATATGTTCTCACTGAACTATGCCCAAATGCTACACCAGGACCACACTCAAGCGCTGTAGAAGTTGCTGAAGCCAGGGCGGCAGAAAAGAGGTGGGTGAATGATGATTTCATGTGCCGCCGCAACATCTTGTGCTATTTATCTGATCATCTGTTTAATCAGTATGCAAATAGAAAAATGACTGCTAAAGAACTATGGGAAGAATTAAAACAAGTTTATTTGTATGAGGAATTTGGAACAAAGAGATCACAAGTGAAAAGATACATGGAATTTGAATTCGTTGAGGAAAAATCCATACTTGAGCAAGTCCAAGAATTAAATGCCATTGCAGACTCTGTTGTCTCTGCTGGAATGGTGATCGACGAAAACTTTCACGTCAGTGTCCTCATCTCCAAGCTTCCTCCATCTTGGAAGGATGTTTGCATCAAGCTAATGCGTGAGGAGTATCTACCATTTTGGATGTTAATGGAACGTTTGAGGACGGAGGAAGAATCTCGTAATCCAGTTAAACAAGGGGGCGAACCTTCCAGTAGTAACACAGGCTATCATGAGGCCAGAAAATTGTTTCAAAGAGGTCCAGATACGAGGCTTTCAAGCATGTATGGCCAGAGGAGTAGGCCAGACGTGAATGTCAAGAGTACAATCTGTTATGTCTGTGGCAAGAAAGGGCATCTTGCCAGAAACTGTTGGAGGAGATTTGACAATCAAACCCAAGAAAAAAGAACAGAAGAAAATAGGCCCTCCACACCAGTAGTTTCACGGGTTAACATGGTTGGTGTCACTGAGTAG 1608 0.4372 MESETRQKIEETVLDILKNANIDEATEFTIRLAASERLGMDLSDLEHKLLVRGIVESYLLAIAEEEGGRFPASELSAPQETREVMQYEQEAKPNKEVLGDSERIICQLSNKRNVVVHDFRGKKLVSIRDFYQKDGKQLPSAKGISLPTEQWSAFKKSVPAIEEAITKMEAKLRPDVHHKQNGDVLNPIHGKQNGDVLNPIHGKQNEDVLNPMHGKQNEDELNPIHDKQNEDVLNPILDAAPPESVPIEISRFDGKNYHFWVQQMESLLKQLKIAYVLTELCPNATPGPHSSAVEVAEARAAEKRWVNDDFMCRRNILCYLSDHLFNQYANRKMTAKELWEELKQVYLYEEFGTKRSQVKRYMEFEFVEEKSILEQVQELNAIADSVVSAGMVIDENFHVSVLISKLPPSWKDVCIKLMREEYLPFWMLMERLRTEEESRNPVKQGGEPSSSNTGYHEARKLFQRGPDTRLSSMYGQRSRPDVNVKSTICYVCGKKGHLARNCWRRFDNQTQEKRTEENRPSTPVVSRVNMVGVTE 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5080g00008 535 ProSiteProfiles Zinc finger CCHC-type profile. 489 502 IPR001878 GO:0003676|GO:0008270
Pral5080g00008 535 FunFam RNA polymerase II transcriptional coactivator KELP 97 169 - -
Pral5080g00008 535 Pfam gag-polypeptide of LTR copia-type 305 440 - -
Pral5080g00008 535 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 3 170 IPR045125 GO:0003713|GO:0060261
Pral5080g00008 535 MobiDBLite consensus disorder prediction 198 222 - -
Pral5080g00008 535 Pfam DEK C terminal domain 4 59 IPR014876 -
Pral5080g00008 535 SUPERFAMILY Retrovirus zinc finger-like domains 476 508 IPR036875 GO:0003676|GO:0008270
Pral5080g00008 535 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 3 60 IPR014876 -
Pral5080g00008 535 Gene3D - 464 522 - -
Pral5080g00008 535 Gene3D Transcriptional Coactivator Pc4; Chain A 98 173 IPR009044 GO:0003677|GO:0006355
Pral5080g00008 535 Pfam Transcriptional Coactivator p15 (PC4) 106 156 IPR003173 GO:0003677|GO:0006355
Pral5080g00008 535 SUPERFAMILY ssDNA-binding transcriptional regulator domain 105 167 IPR009044 GO:0003677|GO:0006355
Pral5080g00008 535 SMART c2hcfinal6 488 504 IPR001878 GO:0003676|GO:0008270
Pral5080g00008 535 Pfam Zinc knuckle 489 502 IPR001878 GO:0003676|GO:0008270
Pral5080g00008 535 MobiDBLite consensus disorder prediction 436 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5080g00008 Pral-Chr5080 48190 52131 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Pral5080g00008 Retrotran_gag_2 1.3e-15 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5080g00008 - - qsa:O6P43_017796 573.548