Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5080g00007 ATGAAGCTTGAGTTGGGTTTAGGAGGTGTGTTGTGGAATGATGAAGAAAAAGGCATGGTTGCATCGGTTCTGGGAAATCGAGCTTTTGAATACTTGATTACAAACCCTGCGGCGAACGACAATTTGTTAATGACAGTCGGAAGCGACGAAAGTTTGCAGAACAAGCTTTCGGATCTCGTGGACCGTCCAAACGCGTCGAATTTCAGCTGGAACTACGCGATTTTCTGGCAAATATCACAGTCGAAGAAATCTGGGGATTGGGTTTTGGGTTGGGGAGATGGCTGTTGCAGAGAACCCAAGGGAGAAGAAGAAGAAGGTGGAGTCAAAGGGCTTCTTACTCTTCGCCTGGAAAAAGATGAGATGCAGCAGAGGATGAGGAAAGGGGTGCTTCAGAAGCTTCACACAACATTTGGGGGTTCTGATGAAGACAATTATGCCTTCGGATTGGATAGGGTTACTGATACAGAAATGTTCTTTCTGGCTTCCATGTACTTCTCCTTCCCTCGAGGCCATGGTGGGCCTGGTAAATGCCTTGCTTCAGGGAAGCATGTGTGGTACTCTGAGGCACTTAGCTCTGACTACTGTGTGAGATCGTTTTTGGCAAAATCAGCTGGAATTCAGACCATAGTTTTGGTCCCTACTGACATCGGAGTTGTGGAATTGGGTTCTGTGAGGATGGTAGGGGAGAGCTTAGAATTGTTGCAGGTGATAAAATCAGAGTTTTCTACACAATCGTCGATTCCTAGGGTTTCCCCACTTTCGCCATTGCCTGTTGTGGTGAATGAGAAGAGAGACGAAAATGGTGTCTTTTCTGGTTTGCCAGTTGGGGATAAGGTGGAGGGAGTTCCAAAGATTTTTGGGCAGGACTTGAACTCGTTAAACTCTGGTCGTCCCCATTTTAGGGAGAAGCTTGCTGTGAGGAAAATGGAGGAGAGGCCTTGGGCAGGTCATGGCCAGCCCAATGGCAATAATATTAGCTTTCCAAATGTGCGAAATGGTATTCATGGATCGAGTTGGGCTGCTAATCAAGGTGGGAAACAGGCGAGCCCAACTGAGATTTATCCTTCAAGGTCCTCAGTTTGCAATGTACCGGAGGGAGTCAACCAGTATAGGCAAGACTTTCGGCTTAGCAACTACCAACCACAAAGGCAGGTGCAAATGCAAATTGATTTCTCTGGAGCCACTTCAAGGCCTTCTGTGAGACCAATCAATGCCGAATCAGAGCTATCCGATGTTGAAGCTTCATGCAAAGAAGAGCAACTGGGGGCAACAGATGAAAGGAAGCCGAGGAAACGGGGTAGAAAGCCTGCCAATGGGAGGGAAGAACCCTTGAATCATGTGGAAGCAGAGAGGCAGAGGCGTGAGAAGCTGAATCAGCGGTTCTATGCTCTTAGATCTGTTGTGCCCAATATATCCAAGATGGACAAGGCTTCTTTGCTGGGAGATGCCATTGCCTATATCCATGAGCTTCAGGCAAAACTAAAGATCATGGAATCTGAGAGGGAGAGATCAGGAAGCACTTCGAGGGATGTACCGGCACCAGTGGCCGATCCGAAAGTAGAAAATAAGAATCAAGCAACCGATGTCGATATTCAAGCTACCCAGGATGAGGTAGTAGTAAGGGTGAGCAGCCCTCTCAATGATCATCCTATTTCAAGAGTTATCCAGAAGTTCAAAGATGCACAAATTAGTGTTGTTGAGTCGAAATTTGCAATGGCAAATGACACCATCTTCCATTCCTTTGTAATCAAGTCTCAAGGATCTGAGCAGCTGACAAAGGAGAAGTTGATTGCAGCATTTTCTTGA 1806 0.4668 MKLELGLGGVLWNDEEKGMVASVLGNRAFEYLITNPAANDNLLMTVGSDESLQNKLSDLVDRPNASNFSWNYAIFWQISQSKKSGDWVLGWGDGCCREPKGEEEEGGVKGLLTLRLEKDEMQQRMRKGVLQKLHTTFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFPRGHGGPGKCLASGKHVWYSEALSSDYCVRSFLAKSAGIQTIVLVPTDIGVVELGSVRMVGESLELLQVIKSEFSTQSSIPRVSPLSPLPVVVNEKRDENGVFSGLPVGDKVEGVPKIFGQDLNSLNSGRPHFREKLAVRKMEERPWAGHGQPNGNNISFPNVRNGIHGSSWAANQGGKQASPTEIYPSRSSVCNVPEGVNQYRQDFRLSNYQPQRQVQMQIDFSGATSRPSVRPINAESELSDVEASCKEEQLGATDERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAIAYIHELQAKLKIMESERERSGSTSRDVPAPVADPKVENKNQATDVDIQATQDEVVVRVSSPLNDHPISRVIQKFKDAQISVVESKFAMANDTIFHSFVIKSQGSEQLTKEKLIAAFS 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5080g00007 601 Gene3D - 434 505 IPR036638 GO:0046983
Pral5080g00007 601 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 444 504 IPR036638 GO:0046983
Pral5080g00007 601 CDD bHLH_AtAIB_like 438 503 - -
Pral5080g00007 601 MobiDBLite consensus disorder prediction 411 452 - -
Pral5080g00007 601 MobiDBLite consensus disorder prediction 499 518 - -
Pral5080g00007 601 Pfam Helix-loop-helix DNA-binding domain 445 491 IPR011598 GO:0046983
Pral5080g00007 601 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 441 490 IPR011598 GO:0046983
Pral5080g00007 601 SMART finulus 447 496 IPR011598 GO:0046983
Pral5080g00007 601 FunFam Transcription factor bHLH13 434 508 - -
Pral5080g00007 601 MobiDBLite consensus disorder prediction 336 357 - -
Pral5080g00007 601 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 241 IPR025610 -
Pral5080g00007 601 MobiDBLite consensus disorder prediction 391 452 - -
Pral5080g00007 601 PANTHER MYC 41 599 IPR045084 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5080g00007 Pral-Chr5080 39215 41977 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5080g00007 5 601 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 50.880 0.0 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral5080g00007 bHLH-MYC_N 1.7e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5080g00007 - - qsa:O6P43_017798 830.861