Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5079g00111 ATGCGCCCCGTTTCGCGGGAAAATTTGGATTTCTTGCTTGAGGCTGAAGAAGTCAAAACCCAAGAATCTGGTGTTGTTCTTGTTAATAACAACGATCTGGGTACATTAATGGTTACAAATTTTCGCCTCCTATTCGTGAGCGAGAAAACAACAAAAGTTATTGCCCTTGGAACAATACCACTTGCAACAATCGAGAAGTTTACCAAGATAGCTGTGAAGACTCAATCAGCTCCTCGTCAGTTGGACAAAACACCATCACAAAGGTTGCTCCAAGTCATTGGAAAGGATATGAGAATTATTGTTTTTGGTTTCAGACCTCGTACAAAACAGAGACGTGCAATATTTGAAGCATTACTGGGATTGACAAAACCTGCAAGACTTTGGGATCTCTATGCTTTTGTATCAGGGCCTTCTAGATCAAGCAACTCAAACCCAAAAGTTCGCTTACTGGATGAGTATTTTCGACTTCTTGGGAAAGGATCTTATAATGGATCAATCAATATGATTAGAAGTGGGTCCTTCACCTTGTCGAATGCCTATTGGAGAATAAGTAGTGTGAATTCCAACTATACTATGTGTCAGACTTATCCATTTGCATTGATTATTCCAAAGAGCGTTAGTGATGATGAAGTGCTTCAGGCTTCCACCTTTCGGGCAAGATGTCGGCTGCCTGTAGTTTCGTGGTGTGATCCTGGTTCTGGTGCAGTCCTTGCCCGATCATCCCAACCCTTGGTTGGTCTCATGATGAATATGAGAAGCAACATGGATGAAAAGCTCGTAGCTGCACTTTGCAACAAACTGGATGATGGTTCACGGAGGAAGCTATATATTGCTGACGCAAGACCAAGGAAAAATGCATTAGCTAATGGGGCCATGGGAGGTGGTTCAGAGTCATCATCAAATTACTTTCAATCTGAAATAGTCTTTTTTGGGATAGACAACATCCATGCAATGAGAGATAGCTTTGCTAGACTTAGAGAGTACTTGGATACTTATGGAAGAGCATCCTCAGACGGAATGTCATCTTTTTTGAGGAATGGTGGGTGGACATGGGGTGGAGGATTACTAAGTAGTATGTCTGCTTCAGTATCAACACTTGGGGACAGTGGATGGTTACTGCACGTTCAAAATGTCTTGGCTGGTGCAGCTTGGATTGCTGCTCGTGTTGCTATTGAGGAGGCTTCTGTGCTTGTACATTGCAGTGATGGATGGGATAGAACAACTCAGTTGGTTTCACTTGCTAGTTTGTTGCTTGATCCATACTATCGGACATTCAAAGGGTTTCAGGCACTTGTTGAAAAAGACTGGTTAGCATTTGGTCATCCATTCTCAGATCGTGTCGGCATGCCATCATTCACTGGAAGCGGCAACACAGCTTCTGAGTTGTCTTGGCAGTCTTGTGGAAATCACCCATCATCACCCATGCATCAATCATCAGGAGCATTCAGTTCCCAACCTACAACCTCTCATGCACAAACTTCAAGCAACTACTCTCCAATTTTTCTGCAGTGGGTGGATTGTGTTTCACAATTGCTGCGGACATATCCTTTTGCTTTTGAGTTCTCCTCAGCCTTCCTGGTGGACTTCTTAGACTGTGTGCTTTCTTGCCGCTTTGGAAACTTCTTATGTAACAGTGAGAAGGAGAGGCAGCAGTTGAATGTCTTTGAAGCCTGTGGATGTTTGTGGACATACCTAGCTGAGTTGCGTGCTTCAGAGAGTGGTTCTCATGTGCATTATAACCTCTTTTATGAACCGTCAAAGCATAACGGTGTTCTTCTTCCTCCAGCAGCAGCTTTGGCCCCAACTTTGTGGCCCCAATTCCATCTCCGTTGGGTTTGTCCTGAAGAATCACAGGCCGGGGAGATTGAAGTAGAATGTAGGAGGATGGCTCTAAATTTCTCTGAGATGAGGAAGGCTAAAGAAGTGGCAGAGAGGAAAGCCAAAGAAATTGCGAATGCCATGGAATCACTGAAAGTAGAGCTCAGAAGCGAGAAGCAACAAAGAATATCAGCAACGAATGTAGCCAAGATGAAAAACAAAGAAAATGTGGTGATGAAGAGGGCAATTCAGTCAATTGGATGCAAGGTTTGCTTCTCCAGCAGTGATGACAATACTATTGATATTGAAATCAGCCCAGCTGAAGCAGCACAAAACTTGAAGTATTCTCTAACCGGAATGGAATTTGATGATAAAAAGGATTTATCTGCTTCAGTAACAATTACAGAAGATGTCAATGATCCAAGCAATGCTATTAGTCAAGTATGTGAAACTCTATGCCCATTTCGTACTCAAGATGGACGCTGCCGGTGGCCCAATGCTGCTTGTGCACAACGTGTCAGCCAGTTTGTTGGTCTAAAGGCAAACTTTGATGCTCTAGATCAACTCTTAATTGATGATGATTATTTCAAGCCTGAGTGA 2418 0.4322 MRPVSRENLDFLLEAEEVKTQESGVVLVNNNDLGTLMVTNFRLLFVSEKTTKVIALGTIPLATIEKFTKIAVKTQSAPRQLDKTPSQRLLQVIGKDMRIIVFGFRPRTKQRRAIFEALLGLTKPARLWDLYAFVSGPSRSSNSNPKVRLLDEYFRLLGKGSYNGSINMIRSGSFTLSNAYWRISSVNSNYTMCQTYPFALIIPKSVSDDEVLQASTFRARCRLPVVSWCDPGSGAVLARSSQPLVGLMMNMRSNMDEKLVAALCNKLDDGSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFFGIDNIHAMRDSFARLREYLDTYGRASSDGMSSFLRNGGWTWGGGLLSSMSASVSTLGDSGWLLHVQNVLAGAAWIAARVAIEEASVLVHCSDGWDRTTQLVSLASLLLDPYYRTFKGFQALVEKDWLAFGHPFSDRVGMPSFTGSGNTASELSWQSCGNHPSSPMHQSSGAFSSQPTTSHAQTSSNYSPIFLQWVDCVSQLLRTYPFAFEFSSAFLVDFLDCVLSCRFGNFLCNSEKERQQLNVFEACGCLWTYLAELRASESGSHVHYNLFYEPSKHNGVLLPPAAALAPTLWPQFHLRWVCPEESQAGEIEVECRRMALNFSEMRKAKEVAERKAKEIANAMESLKVELRSEKQQRISATNVAKMKNKENVVMKRAIQSIGCKVCFSSSDDNTIDIEISPAEAAQNLKYSLTGMEFDDKKDLSASVTITEDVNDPSNAISQVCETLCPFRTQDGRCRWPNAACAQRVSQFVGLKANFDALDQLLIDDDYFKPE 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5079g00111 805 MobiDBLite consensus disorder prediction 466 490 - -
Pral5079g00111 805 Coils Coil 636 667 - -
Pral5079g00111 805 Gene3D - 18 121 IPR011993 -
Pral5079g00111 805 ProSiteProfiles Myotubularin phosphatase domain. 158 608 IPR010569 -
Pral5079g00111 805 PANTHER MYOTUBULARIN-RELATED 19 709 IPR030564 -
Pral5079g00111 805 Pfam Myotubularin-like phosphatase domain 131 550 IPR010569 -
Pral5079g00111 805 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 176 612 IPR029021 -
Pral5079g00111 805 CDD PTP-MTM-like 221 510 - -
Pral5079g00111 805 ProSitePatterns Tyrosine specific protein phosphatases active site. 398 408 IPR016130 GO:0016311|GO:0016791
Pral5079g00111 805 SUPERFAMILY PH domain-like 12 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5079g00111 Pral-Chr5079 1282146 1301878 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5079g00111 8 805 Protein tyrosine phosphatase (PTP) family AT3G10550 66.125 0.0 1073
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5079g00111 K18081 - gmx:100781842 1188.33