Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5079g00078 ATGGGAGTTCAAAGAAAAACGGCTTCTCAGCTTCAGGCCCTTCATAATTTTTATAAAAAGGAGAAGTATCCAACACCGAGAGCAATGGAAGACTTTGCTGGTGCTTTGGGGTTGACATATAAGCAAGTTCAAGATTGGTTTGTTGAGCAAAGGAGGAGAGATAAGAAGGAAAATGGAGTGTTAGGACCGTCATGTTCTACTTCGGGATATGATGCAGTTATAAATAGGAATGGTAGGAAGCAGAAAAAGCAGAAAAGTCATCAGGAGTTGCTTACAGCAAACTACATTCTAAAAAATGTGTTCCGGAAGGGTGGTCCTTTTCCTGATAAGGAATTTGATTCTCTTCCTCCAGGTCCATCCTTTCACCATGTCGGTCTCAACAATTCCTTTTCTGCTGGTCAAGAGGACCAAGGACCAATTAAAAGGAGGAAGGTTTCTGAGAGTGCAGTTGGAAGTCATCCTGAATCAAATAATAAAGCACCATTGAGAAAACATGGTATTGGAAAAGGTTTAATGACAGTGTGGAGGGCTACAAATCCAGATGCTGGAGATCTTCCTATTGGCTTTGGTCTTGGTGATAAGCCAAGGAAAGCAGTAACAAATGCTGGAAGACAAAAAAGTAAACTACAGAATGCGAGAAGTAAAATCCAAGACAAGAGGAGGGCTTTCATGCAAAGAAGAGTGGTGAAATATAACCAGGATGTGAATCATAATCAACCACAGAAGGAAAAATGCGAACTTGTTTTGGGCAGATTTATATCTGAGGAAGAACTTGATCGAGTGTCATTTCTAGTTGATGATGAAGAGCTAGAGATGAGAGAGTTGCAAGCAGGGCCAGCTACACACATGTGTTGTGCTCATCTTGCTTCCAGTGGAATTCTTGGCTGCTCTCTTTGTAAAGATGTGCTGTGTAAGTTTCCCCCACATACTGTTAAGATGAAGAAACCAATCTGTTTGCAACCCTGGGACTCCTCTCCAGAAACTGTCAAGAAACTTTTCAAGGTGTTCCATTTTCTTTATACATATGCTGCTGTTGTTAACATTTGCCCCTTCACTCTTGATGAGTTTGCTCAAGCGTTTCATGATAAGGACTCAATGCTACTTGGAAAGATTCATGTGGCCCTTCTTACAGTTCTTCTATCTGACATTGAAGCGGAACTTACTAGTGGATTTCCGCCTCATTTAAATAAGTCATGCAATTTTCTTGCATTGCTTCACTCGGTTGAAAATCAAGAATACTCTCTGGACTTTTGGAAAAGATCTCTTAATCCCCTAACATGGATAGAAATACTCCGACAAGTTTTGGTTGCTGCAGGATTTGGTTCAAAACAAGGTTCTTTGAGAAGAGAGGCACTTAACAAGGAATTGAATCTGCTAGTAAAGTTTGGCTTATGTGCTGGCACTTTGAAGGGCGAGTTATTTAAAATTTTGTTAGCACAAGGCAATAATGGGTCAAAAGTGTCTGAACTGGCAAAGTCAATGCAGATTGTTGAATTGAACCTTGCCAGCACGACAGAGGAGCTGGAATCTTTAATATATTCAACCTTGTCAAGTGACATTACTTTATTTGAAAAGATTTCATCATGTGCATATCGACTACGCATGAGCTCTTTTAAGAAGGACATTGATGACGTCCAGTCAGATACAGAAGACTCTGGAAGTGTAGATGAACTTAATGACGGTCACACATGGAGCAGTGATGATTTTGAATATGATTCCTGGAACTCCAACTTAAGGATATTGAAGCGGGCAAGCAATTCTATAATGAAAAATAATACACTTATAGCAGCCACTGAAATTGATGAGAGCCATCCGGGTGAAGTGTGGCTATTAGGGTTGATGGAGAGTGAATATTCAGATTTGACCATTGAAGAAAAGTTGAATGCGTTAGTGGCTCTAACTGATCTTCTTTCTTCTGGGTCCAGCGTTAGGATGAAGGATTCGACAAAAGTTACTGCTGATTACAGTTCAAGCATCCAGTTACGTGGCTCTGGAGCAAAAATAAAGAGGTCAATAGTAAAGAAGCCTGGGTCATATTGGAATCAGATCAGACCAATGCATTGTGTCAAGGAAGGGCATTCATCATTGAATCCTCACTCCTATCCAGTGGATTCCTCATTATTATTCTCAAATATCTACAGTGACGCAGAATCCTCTGAGAAGGCAAAAGAAGCAACCGAAATAGGTTTAACCAATTCACACCCCATTCAATCAGTGTTTCTGGGTTCTGACCGTAGGTACAATAGATACTGGCTTTTCTTAGGGCCTTGCAACGTGGGTGACCCTGGCCATAGGAGAGTTTACTTTGAATCTTCTGAAGATGGTCACTGGGAAGTGATTGATGATGAAGAGGCTTTATGTGCCCTGTTGTCAGTTTTGGATGATAGAGGTAAACGGGAGGCACTTCTTGTTGAATCTTTGGAGAAGCTGAAAGACCCTCTTTGCAGGGCTATGTCCAGGATGATGGTCAACCACACTGGAATGTGCCATACGTCAAATTCTGATCAATCTGATCTTGATAGGATCACAGAAGACAGTTACTCTCCGATATCTGATGTAGATAACGTGAGCCTGATTGAGACGGCCAGTGACTCTCTACCTTCAGCCGGGGCTGTGGTGATAGAAGGTGGGAAGAAGGGAGTAGAACAAATGCAAAAGTGGATCCGTCTTCAAGCATATGATTCATGGATTTGGAATTCCTTTTATTTAAATCTCAATGTTGTGAAATATGGTAGAAGGTCTTATATTGATTCTCTGGCCAGATGTGAGAGTTGTCATGATCTGTTCTGGAGGGATGAGAGACACTGTAAAATTTGCCATTTGACATTTGAGCTTGATTTTGATCTTGAAGAAAGATATGCAATCCACACAGCCACATGCAGGGAGAAAGAAAGCAGTAATGCTTTTCCAAATCACAAAATCTTATCATCGAAGATCCAATCACTGAAGGCTGCAATTTATGCTATTGAGTCTGTTATGCCTGTAGATGCGCTGGTGGGTGCTTGGAGGAAGTCTGCTCATAAGCTATGGGTCAGGCGACTCAGACGCACTTCAACTTTAACTGAGCTATTTCAGGTTGTTGCTGATTTTGTTGGTGCTATCAATGAGGAGTGGTTGTTTCAATGCAGTTTTCCTGATGGTCTGGTTGATAAAATAATTGCTTCTTTTGCACTTATGCCCCATACTTCATCAGCTCTTGCTTTATGGTTAGTGAAGTTGGATGCAATAATTGCTCCCTACCTGGACAAAGTCCAGCCTCTGAAGAAGCAGGACATTACTAAGAGAAAAATCTCTGGTGGTGTTTGA 3306 0.412 MGVQRKTASQLQALHNFYKKEKYPTPRAMEDFAGALGLTYKQVQDWFVEQRRRDKKENGVLGPSCSTSGYDAVINRNGRKQKKQKSHQELLTANYILKNVFRKGGPFPDKEFDSLPPGPSFHHVGLNNSFSAGQEDQGPIKRRKVSESAVGSHPESNNKAPLRKHGIGKGLMTVWRATNPDAGDLPIGFGLGDKPRKAVTNAGRQKSKLQNARSKIQDKRRAFMQRRVVKYNQDVNHNQPQKEKCELVLGRFISEEELDRVSFLVDDEELEMRELQAGPATHMCCAHLASSGILGCSLCKDVLCKFPPHTVKMKKPICLQPWDSSPETVKKLFKVFHFLYTYAAVVNICPFTLDEFAQAFHDKDSMLLGKIHVALLTVLLSDIEAELTSGFPPHLNKSCNFLALLHSVENQEYSLDFWKRSLNPLTWIEILRQVLVAAGFGSKQGSLRREALNKELNLLVKFGLCAGTLKGELFKILLAQGNNGSKVSELAKSMQIVELNLASTTEELESLIYSTLSSDITLFEKISSCAYRLRMSSFKKDIDDVQSDTEDSGSVDELNDGHTWSSDDFEYDSWNSNLRILKRASNSIMKNNTLIAATEIDESHPGEVWLLGLMESEYSDLTIEEKLNALVALTDLLSSGSSVRMKDSTKVTADYSSSIQLRGSGAKIKRSIVKKPGSYWNQIRPMHCVKEGHSSLNPHSYPVDSSLLFSNIYSDAESSEKAKEATEIGLTNSHPIQSVFLGSDRRYNRYWLFLGPCNVGDPGHRRVYFESSEDGHWEVIDDEEALCALLSVLDDRGKREALLVESLEKLKDPLCRAMSRMMVNHTGMCHTSNSDQSDLDRITEDSYSPISDVDNVSLIETASDSLPSAGAVVIEGGKKGVEQMQKWIRLQAYDSWIWNSFYLNLNVVKYGRRSYIDSLARCESCHDLFWRDERHCKICHLTFELDFDLEERYAIHTATCREKESSNAFPNHKILSSKIQSLKAAIYAIESVMPVDALVGAWRKSAHKLWVRRLRRTSTLTELFQVVADFVGAINEEWLFQCSFPDGLVDKIIASFALMPHTSSALALWLVKLDAIIAPYLDKVQPLKKQDITKRKISGGV 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5079g00078 1101 CDD homeodomain 4 58 IPR001356 GO:0003677
Pral5079g00078 1101 SUPERFAMILY Homeodomain-like 5 63 IPR009057 -
Pral5079g00078 1101 ProSiteProfiles 'Homeobox' domain profile. 7 57 IPR001356 GO:0003677
Pral5079g00078 1101 Pfam Homeodomain 6 56 IPR001356 GO:0003677
Pral5079g00078 1101 SMART testlast3 326 385 IPR018501 -
Pral5079g00078 1101 PANTHER HOMEOBOX PROTEIN SIX 217 1080 - -
Pral5079g00078 1101 MobiDBLite consensus disorder prediction 116 164 - -
Pral5079g00078 1101 Pfam DDT domain 327 382 IPR018501 -
Pral5079g00078 1101 Gene3D - 2 61 - -
Pral5079g00078 1101 ProSiteProfiles DDT domain profile. 326 385 IPR018501 -
Pral5079g00078 1101 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 737 810 IPR028941 -
Pral5079g00078 1101 SMART HOX_1 1 61 IPR001356 GO:0003677
Pral5079g00078 1101 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 605 644 IPR028942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5079g00078 Pral-Chr5079 891358 902858 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5079g00078 223 1077 Homeobox Transcription Factor Family AT1G28420 25.515 5.90e-73 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pral5079g00078 WSD 3.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5079g00078 - - gmx:100792062 1432.16