Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5079g00076 ATGGGAGTTCAAAGAAAAACGGCTTCTCAGCTTCAGGCCCTTCATAATTTTTATAAAAAGGAGAAGTATCCAACACCGAGAGCAATGGAAGACTTTGCTGGTGCTTTGGGGTTGACATATAAGCAAGTTCAAGATTGGTTTGTTGAGCAAAGGAGGAGAGATAAGAAGGAAAATGGAGTGTTAGGACCGTCATGTTCTACTTCGGGATATGATGCAGTTATAAATAGGAATGGTAGGAAGCAGAAAAAGCAGAAAAGTCATCAGGAGTTGCTTACAGCAAACTACATTCTAAAAAATGTGTTCCGGAAGGGTGGTCCTTTTCCTGATAAGGAATTTGATTCTCTTCCTCCAGGTCCATCCTTTCACCATGTCGGTCTCAACAATTCCTTTTCTGCTGGTCAAGAGGACCAAGGACCAATTAAAAGGAGGAAGGTTTCTGAGAGTGCAGTTGGAAGTCATCCTGAATCAAATAATAAAGCACCATTGAGAAAACATGGTATTGGAAAAGGTTTAATGACAGTGTGGAGGGCTACAAATCCAGATGCTGGAGATCTTCCTATTGGCTTTGGTCTTGGTGATAAGCCAAGGAAAGCAGTAACAAATGCTGGAAGACAAAAAAGTAAACTACAGAATGCGAGAAGTAAAATCCAAGACAAGAGGAGGGCTTTCATGCAAAGAAGAGTGGATGTGAATCATAATCAACCACAGAAGGAAAAATGCGAACTTGTTTTGGGCAGATTTATATCTGAGGAAGAACTTGATCGAGTGTCATTTCTAGTTGATGATGAAGAGCTAGAGATGAGAGAGTTGCAAGCAGGGCCAGCTACACACATGTGTTGTGCTCATCTTGCTTCCAGTGGAATTCTTGGCTGCTCTCTTTGTAAAGATGTGCTGTGTAAGTTTCCCCCACATACTGTTAAGATGAAGAAACCAATCTGTTTGCAACCCTGGGACTCCTCTCCAGAAACTGTCAAGAAACTTTTCAAGGTGTTCCATTTTCTTTATACATATGCTGCTGTTGTTAACATTTGCCCCTTCACTCTTGATGAGTTTGCTCAAGCGTTTCATGATAAGGACTCAATGCTACTTGGAAAGATTCATGTGGCCCTTCTTACAGTTCTTCTATCTGACATTGAAGCGGAACTTACTAGTGGATTTCCGCCTCATTTAAATAAGTCATGCAATTTTCTTGCATTGCTTCACTCGCAGGTTGAAAATCAAGAATACTCTCTGGACTTTTGGAAAAGATCTCTTAATCCCCTAACATGGATAGAAATACTCCGACAAGTTTTGGTTGCTGCAGGATTTGGTTCAAAACAAGGTTCTTTGAGAAGAGAGGCACTTAACAAGGAATTGAATCTGCTAGTAAAGTTTGGCTTATGTGCTGGCACTTTGAAGGGCGAGTTATTTAAAATTTTGTTAGCACAAGGCAATAATGGGTCAAAAGTGTCTGAACTGGCAAAGTCAATGCAGATTGTTGAATTGAACCTTGCCAGCACGACAGAGGAGCTGGAATCTTTAATATATTCAACCTTGTCAAGTGACATTACTTTATTTGAAAAGATTTCATCATGTGCATATCGACTACGCATGAGCTCTTTTAAGAAGGACATTGATGACGTCCAGTCAGATACAGAAGACTCTGGAAGTGTAGATGAACTTAATGACGGTCACACATGGAGCAGTGATGATTTTGAATATGATTCCTGGAACTCCAACTTAAGGATATTGAAGCGGGCAAGCAATTCTATAATGAAAAATAATACACTTATAGCAGCCACTGAAATTGATGAGAGCCATCCGGGTGAAGTGTGGCTATTAGGGTTGATGGAGAGTGAATATTCAGATTTGACCATTGAAGAAAAGTTGAATGCGTTAGTGGCTCTAACTGATCTTCTTTCTTCTGGGTCCAGCGTTAGGATGAAGGATTCGACAAAAGTTACTGCTGATTACAGTTCAAGCATCCAGTTACGTGGCTCTGGAGCAAAAATAAAGAGGTCAATAGTAAAGAAGCCTGGGTCATATTGGAATCAGATCAGACCAATGCATTGTGTCAAGGAAGGGCATTCATCATTGAATCCTCACTCCTATCCAGTGGATTCCTCATTATTATTCTCAAATATCTACAGTGACGCAGAATCCTCTGAGAAGGCAAAAGAAGCAACCGAAATAGGTTTAACCAATTCACACCCCATTCAATCAGTGTTTCTGGGTTCTGACCGTAGGTACAATAGATACTGGCTTTTCTTAGGGCCTTGCAACGTGGGTGACCCTGGCCATAGGAGAGTTTACTTTGAATCTTCTGAAGATGGTCACTGGGAAGTGATTGATGATGAAGAGGCTTTATGTGCCCTGTTGTCAGTTTTGGATGATAGAGGTAAACGGGAGGCACTTCTTGTTGAATCTTTGGAGAAGCTGAAAGACCCTCTTTGCAGGGCTATGTCCAGGATGATGGTCAACCACACTGGAATGTGCCATACGTCAAATTCTGATCAATCTGATCTTGATAGGATCACAGAAGACAGTTACTCTCCGATATCTGATGTAGATAACGTGAGCCTGATTGAGACGGCCAGTGACTCTCTACCTTCAGCCGGGGCTGTGGTGATAGAAGGTGGGAAGAAGGGAGTAGAACAAATGCAAAAGTGGATCCGTCTTCAAGCATATGATTCATGGATTTGGAATTCCTTTTATTTAAATCTCAATGTTGTGAAATATGGTAGAAGGTCTTATATTGATTCTCTGGCCAGATGTGAGAGTTGTCATGATCTGTTCTGGAGGGATGAGAGACACTGTAAAATTTGCCATTTGACATTTGAGCTTGATTTTGATCTTGAAGAAAGATATGCAATCCACACAGCCACATGCAGGGAGAAAGAAAGCAGTAATGCTTTTCCAAATCACAAAATCTTATCATCGAAGATCCAATCACTGAAGGCTGCAATTTATGCTATTGAGTCTGTTATGCCTGTAGATGCGCTGGTGGGTGCTTGGAGGAAGTCTGCTCATAAGCTATGGGTCAGGCGACTCAGACGCACTTCAACTTTAACTGAGCTATTTCAGGTTGTTGCTGATTTTGTTGGTGCTATCAATGAGGAGTGGTTGTTTCAATGCAGTTTTCCTGATGGTCTGGTTGATAAAATAATTGCTTCTTTTGCACTTATGCCCCATACTTCATCAGCTCTTGCTTTATGGTTAGTGAAGTTGGATGCAATAATTGCTCCCTACCTGGACAAAGTCCAGCCTCTGAAGAAGCAGGACATTACTAAGAGAAAAATCTCTGGTGGTGTTTGA 3294 0.4126 MGVQRKTASQLQALHNFYKKEKYPTPRAMEDFAGALGLTYKQVQDWFVEQRRRDKKENGVLGPSCSTSGYDAVINRNGRKQKKQKSHQELLTANYILKNVFRKGGPFPDKEFDSLPPGPSFHHVGLNNSFSAGQEDQGPIKRRKVSESAVGSHPESNNKAPLRKHGIGKGLMTVWRATNPDAGDLPIGFGLGDKPRKAVTNAGRQKSKLQNARSKIQDKRRAFMQRRVDVNHNQPQKEKCELVLGRFISEEELDRVSFLVDDEELEMRELQAGPATHMCCAHLASSGILGCSLCKDVLCKFPPHTVKMKKPICLQPWDSSPETVKKLFKVFHFLYTYAAVVNICPFTLDEFAQAFHDKDSMLLGKIHVALLTVLLSDIEAELTSGFPPHLNKSCNFLALLHSQVENQEYSLDFWKRSLNPLTWIEILRQVLVAAGFGSKQGSLRREALNKELNLLVKFGLCAGTLKGELFKILLAQGNNGSKVSELAKSMQIVELNLASTTEELESLIYSTLSSDITLFEKISSCAYRLRMSSFKKDIDDVQSDTEDSGSVDELNDGHTWSSDDFEYDSWNSNLRILKRASNSIMKNNTLIAATEIDESHPGEVWLLGLMESEYSDLTIEEKLNALVALTDLLSSGSSVRMKDSTKVTADYSSSIQLRGSGAKIKRSIVKKPGSYWNQIRPMHCVKEGHSSLNPHSYPVDSSLLFSNIYSDAESSEKAKEATEIGLTNSHPIQSVFLGSDRRYNRYWLFLGPCNVGDPGHRRVYFESSEDGHWEVIDDEEALCALLSVLDDRGKREALLVESLEKLKDPLCRAMSRMMVNHTGMCHTSNSDQSDLDRITEDSYSPISDVDNVSLIETASDSLPSAGAVVIEGGKKGVEQMQKWIRLQAYDSWIWNSFYLNLNVVKYGRRSYIDSLARCESCHDLFWRDERHCKICHLTFELDFDLEERYAIHTATCREKESSNAFPNHKILSSKIQSLKAAIYAIESVMPVDALVGAWRKSAHKLWVRRLRRTSTLTELFQVVADFVGAINEEWLFQCSFPDGLVDKIIASFALMPHTSSALALWLVKLDAIIAPYLDKVQPLKKQDITKRKISGGV 1097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5079g00076 1097 CDD homeodomain 4 58 IPR001356 GO:0003677
Pral5079g00076 1097 SUPERFAMILY Homeodomain-like 5 63 IPR009057 -
Pral5079g00076 1097 ProSiteProfiles 'Homeobox' domain profile. 7 57 IPR001356 GO:0003677
Pral5079g00076 1097 Gene3D - 2 61 - -
Pral5079g00076 1097 SMART testlast3 321 380 IPR018501 -
Pral5079g00076 1097 Pfam Homeodomain 6 56 IPR001356 GO:0003677
Pral5079g00076 1097 PANTHER HOMEOBOX PROTEIN SIX 224 1076 - -
Pral5079g00076 1097 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 601 640 IPR028942 -
Pral5079g00076 1097 MobiDBLite consensus disorder prediction 116 164 - -
Pral5079g00076 1097 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 733 806 IPR028941 -
Pral5079g00076 1097 ProSiteProfiles DDT domain profile. 321 380 IPR018501 -
Pral5079g00076 1097 SMART HOX_1 1 61 IPR001356 GO:0003677
Pral5079g00076 1097 Pfam DDT domain 322 377 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5079g00076 Pral-Chr5079 891358 902859 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5079g00076 223 1073 Homeobox Transcription Factor Family AT1G28420 25.908 2.02e-73 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pral5079g00076 WSD 3.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5079g00076 - - gmx:100792062 1421.76